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Sample GSM945275 Query DataSets for GSM945275
Status Public on Jun 07, 2012
Title UW_ChipSeq_NB4_H3K4me3
Sample type SRA
Source name NB4
Organism Homo sapiens
Characteristics lab: UW
lab description: Stamatoyannopoulous - University of Washington
datatype: ChipSeq
datatype description: Chromatin IP Sequencing
cell: NB4
cell organism: human
cell description: acute promyelocytic leukemia cell line. (PMID: 1995093)
cell karyotype: cancer
cell lineage: mesoderm
cell sex: U
antibody: H3K4me3
antibody antibodydescription: rabbit polyclonal. Antibody Target: H3K4me3
antibody targetdescription: Histone H3 (tri methyl K4). Marks promoters that are active or poised to be activated.
antibody vendorname: Millipore
antibody vendorid: 07-473
treatment: None
treatment description: No special treatment or protocol applies
control: std
control description: Standard input signal for most experiments.
controlid: wgEncodeEH000970
labexpid: DS16346
labversion: Bowtie 0.12.7
replicate: 1
Biomaterial provider Refer to protocol documents for differing sources, UW: DSMZ (Deutsche Sammlung von Mikroorganismen und Zellkulturen) ACC-207 or Yale (Stanford): National Cell Culture Center
Treatment protocol None
Growth protocol NB4_Stam_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina Genome Analyzer
Data processing
Submission date Jun 07, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL9052
Series (1)
GSE35583 Histone Modifications by ChIP-seq from ENCODE/University of Washington
SRA SRX190058
BioSample SAMN01731537
Named Annotation GSM945275_hg19_wgEncodeUwHistoneNb4H3k4me3StdRawRep1.bigWig

Supplementary file Size Download File type/resource
GSM945275_hg19_wgEncodeUwHistoneNb4H3k4me3StdHotspotsRep1.broadPeak.gz 866.4 Kb (ftp)(http) BROADPEAK
GSM945275_hg19_wgEncodeUwHistoneNb4H3k4me3StdPkRep1.narrowPeak.gz 757.5 Kb (ftp)(http) NARROWPEAK
GSM945275_hg19_wgEncodeUwHistoneNb4H3k4me3StdRawRep1.bigWig 89.8 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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