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Sample GSM945271 Query DataSets for GSM945271
Status Public on Jun 07, 2012
Title UW_ChipSeq_HRPEpiC_H3K4me3
Sample type SRA
Source name HRPEpiC
Organism Homo sapiens
Characteristics lab: UW
lab description: Stamatoyannopoulous - University of Washington
datatype: ChipSeq
datatype description: Chromatin IP Sequencing
cell: HRPEpiC
cell organism: human
cell description: retinal pigment epithelial cells
cell karyotype: normal
cell lineage: ectoderm
cell sex: U
antibody: H3K4me3
antibody antibodydescription: rabbit polyclonal. Antibody Target: H3K4me3
antibody targetdescription: Histone H3 (tri methyl K4). Marks promoters that are active or poised to be activated.
antibody vendorname: Millipore
antibody vendorid: 07-473
treatment: None
treatment description: No special treatment or protocol applies
control: std
control description: Standard input signal for most experiments.
controlid: wgEncodeEH000962
labexpid: DS16189
labversion: Bowtie 0.12.7
replicate: 1
Biomaterial provider ScienCell
Treatment protocol None
Growth protocol HRPEpiC_Stam_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina Genome Analyzer
Data processing
Submission date Jun 07, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL9052
Series (1)
GSE35583 Histone Modifications by ChIP-seq from ENCODE/University of Washington
SRA SRX190054
BioSample SAMN01731533
Named Annotation GSM945271_hg19_wgEncodeUwHistoneHrpeH3k4me3StdRawRep1.bigWig
Named Annotation GSM945271_hg19_wgEncodeUwHistoneHrpeH3k4me3StdRawRep2.bigWig

Supplementary file Size Download File type/resource
GSM945271_hg19_wgEncodeUwHistoneHrpeH3k4me3StdHotspotsRep1.broadPeak.gz 677.9 Kb (ftp)(http) BROADPEAK
GSM945271_hg19_wgEncodeUwHistoneHrpeH3k4me3StdHotspotsRep2.broadPeak.gz 829.9 Kb (ftp)(http) BROADPEAK
GSM945271_hg19_wgEncodeUwHistoneHrpeH3k4me3StdPkRep1.narrowPeak.gz 673.9 Kb (ftp)(http) NARROWPEAK
GSM945271_hg19_wgEncodeUwHistoneHrpeH3k4me3StdPkRep2.narrowPeak.gz 699.2 Kb (ftp)(http) NARROWPEAK
GSM945271_hg19_wgEncodeUwHistoneHrpeH3k4me3StdRawRep1.bigWig 87.7 Mb (ftp)(http) BIGWIG
GSM945271_hg19_wgEncodeUwHistoneHrpeH3k4me3StdRawRep2.bigWig 116.7 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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