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Sample GSM945269 Query DataSets for GSM945269
Status Public on Jun 07, 2012
Title UW_ChipSeq_MCF-7_H3K4me3
Sample type SRA
Source name MCF-7
Organism Homo sapiens
Characteristics lab: UW
lab description: Stamatoyannopoulous - University of Washington
datatype: ChipSeq
datatype description: Chromatin IP Sequencing
cell: MCF-7
cell organism: human
cell description: mammary gland, adenocarcinoma. (PMID: 4357757), newly promoted to tier 2: not in 2011 analysis
cell karyotype: cancer
cell lineage: ectoderm
cell sex: F
antibody: H3K4me3
antibody antibodydescription: rabbit polyclonal. Antibody Target: H3K4me3
antibody targetdescription: Histone H3 (tri methyl K4). Marks promoters that are active or poised to be activated.
antibody vendorname: Millipore
antibody vendorid: 07-473
treatment: None
treatment description: No special treatment or protocol applies
control: std
control description: Standard input signal for most experiments.
controlid: wgEncodeEH000968
labexpid: DS16201
labversion: Bowtie 0.12.7
replicate: 2
Biomaterial provider ATCC
Treatment protocol None
Growth protocol Stam_15_protocols.pdf
Extracted molecule genomic DNA
Extraction protocol Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina Genome Analyzer
Data processing
Submission date Jun 07, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL9052
Series (2)
GSE35583 Histone Modifications by ChIP-seq from ENCODE/University of Washington
GSE51334 DNA replication-timing boundaries separate stable chromosome domains with cell-type-specific functions
SRA SRX190052
BioSample SAMN01731531
Named Annotation GSM945269_hg19_wgEncodeUwHistoneMcf7H3k04me3StdRawRep2.bigWig
Named Annotation GSM945269_hg19_wgEncodeUwHistoneMcf7H3k4me3StdRawRep1.bigWig

Supplementary file Size Download File type/resource
GSM945269_hg19_wgEncodeUwHistoneMcf7H3k04me3StdHotspotsRep2.broadPeak.gz 1.2 Mb (ftp)(http) BROADPEAK
GSM945269_hg19_wgEncodeUwHistoneMcf7H3k04me3StdPkRep2.narrowPeak.gz 844.9 Kb (ftp)(http) NARROWPEAK
GSM945269_hg19_wgEncodeUwHistoneMcf7H3k04me3StdRawRep2.bigWig 102.1 Mb (ftp)(http) BIGWIG
GSM945269_hg19_wgEncodeUwHistoneMcf7H3k4me3StdHotspotsRep1.broadPeak.gz 1.4 Mb (ftp)(http) BROADPEAK
GSM945269_hg19_wgEncodeUwHistoneMcf7H3k4me3StdPkRep1.narrowPeak.gz 821.4 Kb (ftp)(http) NARROWPEAK
GSM945269_hg19_wgEncodeUwHistoneMcf7H3k4me3StdRawRep1.bigWig 151.1 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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