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Sample GSM945267 Query DataSets for GSM945267
Status Public on Jun 07, 2012
Title UW_ChipSeq_Jurkat_H3K4me3
Sample type SRA
Source name Jurkat
Organism Homo sapiens
Characteristics lab: UW
lab description: Stamatoyannopoulous - University of Washington
datatype: ChipSeq
datatype description: Chromatin IP Sequencing
cell: Jurkat
cell organism: human
cell description: T lymphoblastoid derived from an acute T cell leukemia, "The Jurkat cell line was established from the peripheral blood of a 14 year old boy by Schneider et al., and was originally designated JM." - ATCC. (PMID: 68013)
cell karyotype: cancer
cell lineage: mesoderm
cell sex: M
antibody: H3K4me3
antibody antibodydescription: rabbit polyclonal. Antibody Target: H3K4me3
antibody targetdescription: Histone H3 (tri methyl K4). Marks promoters that are active or poised to be activated.
antibody vendorname: Millipore
antibody vendorid: 07-473
treatment: None
treatment description: No special treatment or protocol applies
control: std
control description: Standard input signal for most experiments.
controlid: wgEncodeEH000966
labexpid: DS16197
labversion: Bowtie 0.12.7
replicate: 1
Biomaterial provider ATCC
Treatment protocol None
Growth protocol Jurkat_Stam_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina Genome Analyzer
Data processing
Submission date Jun 07, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL9052
Series (1)
GSE35583 Histone Modifications by ChIP-seq from ENCODE/University of Washington
SRA SRX190050
BioSample SAMN01731529
Named Annotation GSM945267_hg19_wgEncodeUwHistoneJurkatH3k4me3StdRawRep1.bigWig
Named Annotation GSM945267_hg19_wgEncodeUwHistoneJurkatH3k4me3StdRawRep2.bigWig

Supplementary file Size Download File type/resource
GSM945267_hg19_wgEncodeUwHistoneJurkatH3k4me3StdHotspotsRep1.broadPeak.gz 647.2 Kb (ftp)(http) BROADPEAK
GSM945267_hg19_wgEncodeUwHistoneJurkatH3k4me3StdHotspotsRep2.broadPeak.gz 773.0 Kb (ftp)(http) BROADPEAK
GSM945267_hg19_wgEncodeUwHistoneJurkatH3k4me3StdPkRep1.narrowPeak.gz 621.6 Kb (ftp)(http) NARROWPEAK
GSM945267_hg19_wgEncodeUwHistoneJurkatH3k4me3StdPkRep2.narrowPeak.gz 605.0 Kb (ftp)(http) NARROWPEAK
GSM945267_hg19_wgEncodeUwHistoneJurkatH3k4me3StdRawRep1.bigWig 111.7 Mb (ftp)(http) BIGWIG
GSM945267_hg19_wgEncodeUwHistoneJurkatH3k4me3StdRawRep2.bigWig 103.5 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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