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Sample GSM945264 Query DataSets for GSM945264
Status Public on Jun 07, 2012
Title UW_ChipSeq_SK-N-MC_H3K4me3
Sample type SRA
Source name SK-N-MC
Organism Homo sapiens
Characteristics lab: UW
lab description: Stamatoyannopoulous - University of Washington
datatype: ChipSeq
datatype description: Chromatin IP Sequencing
cell: SK-N-MC
cell organism: human
cell description: neuroepithelioma cell line derived from a metastatic supra-orbital human brain tumor, "SK-N-MC was isolated in September of l971 and was found to have moderate dopamine - beta - hydroxylase activity as well as formaldehyde induced fluorescence indicative of intracellular catecholamines." - ATCC. (Biedler, et al. Morphology and Growth, Tumorigenicity, and Cytogenetics of Human Neuroblastoma Cells in Continuous Culture. Cancer Research 33, 2643-2652, November 1973.)
cell karyotype: cancer
cell lineage: ectoderm
cell sex: F
antibody: H3K4me3
antibody antibodydescription: rabbit polyclonal. Antibody Target: H3K4me3
antibody targetdescription: Histone H3 (tri methyl K4). Marks promoters that are active or poised to be activated.
antibody vendorname: Millipore
antibody vendorid: 07-473
treatment: None
treatment description: No special treatment or protocol applies
control: std
control description: Standard input signal for most experiments.
controlid: wgEncodeEH001901
labexpid: DS18344
labversion: Bowtie 0.12.7
replicate: 1
Biomaterial provider ATCC
Treatment protocol None
Growth protocol SK-N-MC_Stam_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina Genome Analyzer
Data processing
Submission date Jun 07, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL9052
Series (1)
GSE35583 Histone Modifications by ChIP-seq from ENCODE/University of Washington
SRA SRX190047
BioSample SAMN01731526
Named Annotation GSM945264_hg19_wgEncodeUwHistoneSknmcH3k04me3StdRawRep1.bigWig
Named Annotation GSM945264_hg19_wgEncodeUwHistoneSknmcH3k04me3StdRawRep2.bigWig

Supplementary file Size Download File type/resource
GSM945264_hg19_wgEncodeUwHistoneSknmcH3k04me3StdHotspotsRep1.broadPeak.gz 584.9 Kb (ftp)(http) BROADPEAK
GSM945264_hg19_wgEncodeUwHistoneSknmcH3k04me3StdHotspotsRep2.broadPeak.gz 1.6 Mb (ftp)(http) BROADPEAK
GSM945264_hg19_wgEncodeUwHistoneSknmcH3k04me3StdPkRep1.narrowPeak.gz 650.1 Kb (ftp)(http) NARROWPEAK
GSM945264_hg19_wgEncodeUwHistoneSknmcH3k04me3StdPkRep2.narrowPeak.gz 599.6 Kb (ftp)(http) NARROWPEAK
GSM945264_hg19_wgEncodeUwHistoneSknmcH3k04me3StdRawRep1.bigWig 48.0 Mb (ftp)(http) BIGWIG
GSM945264_hg19_wgEncodeUwHistoneSknmcH3k04me3StdRawRep2.bigWig 80.8 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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