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Sample GSM945261 Query DataSets for GSM945261
Status Public on Jun 07, 2012
Title UW_ChipSeq_PANC-1_H3K4me3
Sample type SRA
Source name PANC-1
Organism Homo sapiens
Characteristics lab: UW
lab description: Stamatoyannopoulous - University of Washington
datatype: ChipSeq
datatype description: Chromatin IP Sequencing
cell: PANC-1
cell organism: human
cell description: pancreatic carcinoma, (PMID: 1140870) PANC-1 was established from a pancreatic carcinoma, which was extracted via pancreatico-duodenectomy specimen from a 56-year-old Caucasian individual. Malignancy of this cell line was verified via in vitro and in vivo assays.
cell karyotype: cancer
cell lineage: endoderm
cell sex: M
antibody: H3K4me3
antibody antibodydescription: rabbit polyclonal. Antibody Target: H3K4me3
antibody targetdescription: Histone H3 (tri methyl K4). Marks promoters that are active or poised to be activated.
antibody vendorname: Millipore
antibody vendorid: 07-473
treatment: None
treatment description: No special treatment or protocol applies
control: std
control description: Standard input signal for most experiments.
controlid: wgEncodeEH001900
labexpid: DS18335
labversion: Bowtie 0.12.7
replicate: 1
Biomaterial provider ATCC
Treatment protocol None
Growth protocol PANC-1_Stam_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina Genome Analyzer
Data processing
Submission date Jun 07, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL9052
Series (1)
GSE35583 Histone Modifications by ChIP-seq from ENCODE/University of Washington
SRA SRX190044
BioSample SAMN01731523
Named Annotation GSM945261_hg19_wgEncodeUwHistonePanc1H3k04me3StdRawRep1.bigWig
Named Annotation GSM945261_hg19_wgEncodeUwHistonePanc1H3k04me3StdRawRep2.bigWig

Supplementary file Size Download File type/resource
GSM945261_hg19_wgEncodeUwHistonePanc1H3k04me3StdHotspotsRep1.broadPeak.gz 1003.7 Kb (ftp)(http) BROADPEAK
GSM945261_hg19_wgEncodeUwHistonePanc1H3k04me3StdHotspotsRep2.broadPeak.gz 1020.6 Kb (ftp)(http) BROADPEAK
GSM945261_hg19_wgEncodeUwHistonePanc1H3k04me3StdPkRep1.narrowPeak.gz 801.8 Kb (ftp)(http) NARROWPEAK
GSM945261_hg19_wgEncodeUwHistonePanc1H3k04me3StdPkRep2.narrowPeak.gz 782.0 Kb (ftp)(http) NARROWPEAK
GSM945261_hg19_wgEncodeUwHistonePanc1H3k04me3StdRawRep1.bigWig 73.7 Mb (ftp)(http) BIGWIG
GSM945261_hg19_wgEncodeUwHistonePanc1H3k04me3StdRawRep2.bigWig 88.5 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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