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Sample GSM945251 Query DataSets for GSM945251
Status Public on Jun 07, 2012
Title UW_ChipSeq_NHDF-neo_H3K4me3
Sample type SRA
Source name NHDF-neo
Organism Homo sapiens
Characteristics lab: UW
lab description: Stamatoyannopoulous - University of Washington
datatype: ChipSeq
datatype description: Chromatin IP Sequencing
cell: NHDF-neo
cell organism: human
cell description: neonatal dermal fibroblasts
cell karyotype: normal
cell lineage: mesoderm
cell sex: U
antibody: H3K4me3
antibody antibodydescription: rabbit polyclonal. Antibody Target: H3K4me3
antibody targetdescription: Histone H3 (tri methyl K4). Marks promoters that are active or poised to be activated.
antibody vendorname: Millipore
antibody vendorid: 07-473
treatment: None
treatment description: No special treatment or protocol applies
control: std
control description: Standard input signal for most experiments.
controlid: wgEncodeEH000972
labexpid: DS16206
labversion: Bowtie 0.12.7
replicate: 1
Biomaterial provider Lonza
Treatment protocol None
Growth protocol NHDF-neo_Stam_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina Genome Analyzer
Data processing
Submission date Jun 07, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL9052
Series (1)
GSE35583 Histone Modifications by ChIP-seq from ENCODE/University of Washington
SRA SRX190034
BioSample SAMN01731513
Named Annotation GSM945251_hg19_wgEncodeUwHistoneNhdfneoH3k4me3StdRawRep1.bigWig
Named Annotation GSM945251_hg19_wgEncodeUwHistoneNhdfneoH3k4me3StdRawRep2.bigWig

Supplementary file Size Download File type/resource
GSM945251_hg19_wgEncodeUwHistoneNhdfneoH3k4me3StdHotspotsRep1.broadPeak.gz 985.1 Kb (ftp)(http) BROADPEAK
GSM945251_hg19_wgEncodeUwHistoneNhdfneoH3k4me3StdHotspotsRep2.broadPeak.gz 1.1 Mb (ftp)(http) BROADPEAK
GSM945251_hg19_wgEncodeUwHistoneNhdfneoH3k4me3StdPkRep1.narrowPeak.gz 761.2 Kb (ftp)(http) NARROWPEAK
GSM945251_hg19_wgEncodeUwHistoneNhdfneoH3k4me3StdPkRep2.narrowPeak.gz 758.4 Kb (ftp)(http) NARROWPEAK
GSM945251_hg19_wgEncodeUwHistoneNhdfneoH3k4me3StdRawRep1.bigWig 121.8 Mb (ftp)(http) BIGWIG
GSM945251_hg19_wgEncodeUwHistoneNhdfneoH3k4me3StdRawRep2.bigWig 130.2 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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