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Sample GSM945244 Query DataSets for GSM945244
Status Public on Jun 07, 2012
Title UW_ChipSeq_A549_H3K4me3
Sample type SRA
Source name A549
Organism Homo sapiens
Characteristics biomaterial_type: immortalized cell line
lab: UW
lab description: Stamatoyannopoulous - University of Washington
datatype: ChipSeq
datatype description: Chromatin IP Sequencing
line: A549
cell organism: human
cell description: epithelial cell line derived from a lung carcinoma tissue. (PMID: 175022), "This line was initiated in 1972 by D.J. Giard, et al. through explant culture of lung carcinomatous tissue from a 58-year-old caucasian male." - ATCC, newly promoted to tier 2: not in 2011 analysis
cell karyotype: cancer
cell lineage: endoderm
cell sex: M
antibody: H3K4me3
antibody antibodydescription: rabbit polyclonal. Antibody Target: H3K4me3
antibody targetdescription: Histone H3 (tri methyl K4). Marks promoters that are active or poised to be activated.
antibody vendorname: Millipore
antibody vendorid: 07-473
treatment: None
treatment description: No special treatment or protocol applies
control: std
control description: Standard input signal for most experiments.
controlid: wgEncodeEH001904
labexpid: DS18305
labversion: Bowtie 0.12.7
replicate: 1
Biomaterial provider ATCC
Treatment protocol None
Growth protocol A549_Stam_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina Genome Analyzer
Data processing
Submission date Jun 07, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL9052
Series (1)
GSE35583 Histone Modifications by ChIP-seq from ENCODE/University of Washington
SRA SRX190027
BioSample SAMN01731506
Named Annotation GSM945244_hg19_wgEncodeUwHistoneA549H3k04me3StdRawRep1.bigWig
Named Annotation GSM945244_hg19_wgEncodeUwHistoneA549H3k04me3StdRawRep2.bigWig

Supplementary file Size Download File type/resource
GSM945244_hg19_wgEncodeUwHistoneA549H3k04me3StdHotspotsRep1.broadPeak.gz 855.8 Kb (ftp)(http) BROADPEAK
GSM945244_hg19_wgEncodeUwHistoneA549H3k04me3StdHotspotsRep2.broadPeak.gz 964.6 Kb (ftp)(http) BROADPEAK
GSM945244_hg19_wgEncodeUwHistoneA549H3k04me3StdPkRep1.narrowPeak.gz 769.1 Kb (ftp)(http) NARROWPEAK
GSM945244_hg19_wgEncodeUwHistoneA549H3k04me3StdPkRep2.narrowPeak.gz 770.3 Kb (ftp)(http) NARROWPEAK
GSM945244_hg19_wgEncodeUwHistoneA549H3k04me3StdRawRep1.bigWig 48.9 Mb (ftp)(http) BIGWIG
GSM945244_hg19_wgEncodeUwHistoneA549H3k04me3StdRawRep2.bigWig 58.2 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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