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Sample GSM945229 Query DataSets for GSM945229
Status Public on Jun 07, 2012
Title UW_ChipSeq_CD20+_RO01778_H3K4me3
Sample type SRA
 
Source name CD20+_RO01778
Organism Homo sapiens
Characteristics donor_id: ENCDO114AAA
biomaterial_type: primary cell
cell_type: B cell
lab: UW
lab description: Stamatoyannopoulous - University of Washington
datatype: ChipSeq
datatype description: Chromatin IP Sequencing
cell: CD20+_RO01778
cell organism: human
cell description: B cells, caucasian, draw number 1, newly promoted to tier 2: not in 2011 analysis
cell karyotype: normal
cell lineage: mesoderm
cell sex: F
antibody: H3K4me3
antibody antibodydescription: rabbit polyclonal. Antibody Target: H3K4me3
antibody targetdescription: Histone H3 (tri methyl K4). Marks promoters that are active or poised to be activated.
antibody vendorname: Millipore
antibody vendorid: 07-473
treatment: None
treatment description: No special treatment or protocol applies
control: std
control description: Standard input signal for most experiments.
controlid: wgEncodeEH002170
labexpid: DS18985
labversion: Bowtie 0.12.7
replicate: 1
Biomaterial provider Rajinder Kaul, UW
Treatment protocol None
Growth protocol CD20+_Stam_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeUwHistone
 
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina Genome Analyzer
 
Data processing http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeUwHistone
 
Submission date Jun 07, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL9052
Series (1)
GSE35583 Histone Modifications by ChIP-seq from ENCODE/University of Washington
Relations
SRA SRX190012
BioSample SAMN01731491
Named Annotation GSM945229_hg19_wgEncodeUwHistoneCd20ro01778H3k04me3StdRawRep1.bigWig
Named Annotation GSM945229_hg19_wgEncodeUwHistoneCd20ro01778H3k04me3StdRawRep2.bigWig

Supplementary file Size Download File type/resource
GSM945229_hg19_wgEncodeUwHistoneCd20ro01778H3k04me3StdHotspotsRep1.broadPeak.gz 775.4 Kb (ftp)(http) BROADPEAK
GSM945229_hg19_wgEncodeUwHistoneCd20ro01778H3k04me3StdHotspotsRep2.broadPeak.gz 793.8 Kb (ftp)(http) BROADPEAK
GSM945229_hg19_wgEncodeUwHistoneCd20ro01778H3k04me3StdPkRep1.narrowPeak.gz 670.6 Kb (ftp)(http) NARROWPEAK
GSM945229_hg19_wgEncodeUwHistoneCd20ro01778H3k04me3StdPkRep2.narrowPeak.gz 686.9 Kb (ftp)(http) NARROWPEAK
GSM945229_hg19_wgEncodeUwHistoneCd20ro01778H3k04me3StdRawRep1.bigWig 81.9 Mb (ftp)(http) BIGWIG
GSM945229_hg19_wgEncodeUwHistoneCd20ro01778H3k04me3StdRawRep2.bigWig 72.3 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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