GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Sample GSM945229 Query DataSets for GSM945229
Status Public on Jun 07, 2012
Title UW_ChipSeq_CD20+_RO01778_H3K4me3
Sample type SRA
Source name CD20+_RO01778
Organism Homo sapiens
Characteristics donor_id: ENCDO114AAA
biomaterial_type: primary cell
cell_type: B cell
lab: UW
lab description: Stamatoyannopoulous - University of Washington
datatype: ChipSeq
datatype description: Chromatin IP Sequencing
cell: CD20+_RO01778
cell organism: human
cell description: B cells, caucasian, draw number 1, newly promoted to tier 2: not in 2011 analysis
cell karyotype: normal
cell lineage: mesoderm
cell sex: F
antibody: H3K4me3
antibody antibodydescription: rabbit polyclonal. Antibody Target: H3K4me3
antibody targetdescription: Histone H3 (tri methyl K4). Marks promoters that are active or poised to be activated.
antibody vendorname: Millipore
antibody vendorid: 07-473
treatment: None
treatment description: No special treatment or protocol applies
control: std
control description: Standard input signal for most experiments.
controlid: wgEncodeEH002170
labexpid: DS18985
labversion: Bowtie 0.12.7
replicate: 1
Biomaterial provider Rajinder Kaul, UW
Treatment protocol None
Growth protocol CD20+_Stam_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina Genome Analyzer
Data processing
Submission date Jun 07, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL9052
Series (1)
GSE35583 Histone Modifications by ChIP-seq from ENCODE/University of Washington
SRA SRX190012
BioSample SAMN01731491
Named Annotation GSM945229_hg19_wgEncodeUwHistoneCd20ro01778H3k04me3StdRawRep1.bigWig
Named Annotation GSM945229_hg19_wgEncodeUwHistoneCd20ro01778H3k04me3StdRawRep2.bigWig

Supplementary file Size Download File type/resource
GSM945229_hg19_wgEncodeUwHistoneCd20ro01778H3k04me3StdHotspotsRep1.broadPeak.gz 775.4 Kb (ftp)(http) BROADPEAK
GSM945229_hg19_wgEncodeUwHistoneCd20ro01778H3k04me3StdHotspotsRep2.broadPeak.gz 793.8 Kb (ftp)(http) BROADPEAK
GSM945229_hg19_wgEncodeUwHistoneCd20ro01778H3k04me3StdPkRep1.narrowPeak.gz 670.6 Kb (ftp)(http) NARROWPEAK
GSM945229_hg19_wgEncodeUwHistoneCd20ro01778H3k04me3StdPkRep2.narrowPeak.gz 686.9 Kb (ftp)(http) NARROWPEAK
GSM945229_hg19_wgEncodeUwHistoneCd20ro01778H3k04me3StdRawRep1.bigWig 81.9 Mb (ftp)(http) BIGWIG
GSM945229_hg19_wgEncodeUwHistoneCd20ro01778H3k04me3StdRawRep2.bigWig 72.3 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap