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Sample GSM945215 Query DataSets for GSM945215
Status Public on Jun 07, 2012
Title UW_ChipSeq_WI-38_H3K4me3_4OHTAM_20nM_72hr
Sample type SRA
Source name WI-38
Organism Homo sapiens
Characteristics lab: UW
lab description: Stamatoyannopoulous - University of Washington
datatype: ChipSeq
datatype description: Chromatin IP Sequencing
cell: WI-38
cell organism: human
cell description: embryonic lung fibroblast cells, hTERT immortalized, includes Raf1 construct
cell karyotype: normal
cell lineage: endoderm
cell sex: F
antibody: H3K4me3
antibody antibodydescription: rabbit polyclonal. Antibody Target: H3K4me3
antibody targetdescription: Histone H3 (tri methyl K4). Marks promoters that are active or poised to be activated.
antibody vendorname: Millipore
antibody vendorid: 07-473
treatment: 4OHTAM_20nM_72hr
treatment description: 72 hours with 20 nM 4-hydroxytamoxifen (Stam)
control: std
control description: Standard input signal for most experiments.
controlid: wgEncodeEH002048
labexpid: DS18355
labversion: Bowtie 0.12.7
replicate: 1
Biomaterial provider Dr. Carl Mann, SBIGeM
Treatment protocol 4OHTAM_20nM_72hr
Growth protocol WI38_Stam_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina Genome Analyzer
Data processing
Submission date Jun 07, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL9052
Series (1)
GSE35583 Histone Modifications by ChIP-seq from ENCODE/University of Washington
SRA SRX189998
BioSample SAMN01731477
Named Annotation GSM945215_hg19_wgEncodeUwHistoneWi38H3k04me3OhtamStdRawRep1.bigWig
Named Annotation GSM945215_hg19_wgEncodeUwHistoneWi38H3k04me3OhtamStdRawRep2.bigWig

Supplementary file Size Download File type/resource
GSM945215_hg19_wgEncodeUwHistoneWi38H3k04me3OhtamStdHotspotsRep1.broadPeak.gz 604.1 Kb (ftp)(http) BROADPEAK
GSM945215_hg19_wgEncodeUwHistoneWi38H3k04me3OhtamStdHotspotsRep2.broadPeak.gz 722.5 Kb (ftp)(http) BROADPEAK
GSM945215_hg19_wgEncodeUwHistoneWi38H3k04me3OhtamStdPkRep1.narrowPeak.gz 645.8 Kb (ftp)(http) NARROWPEAK
GSM945215_hg19_wgEncodeUwHistoneWi38H3k04me3OhtamStdPkRep2.narrowPeak.gz 655.2 Kb (ftp)(http) NARROWPEAK
GSM945215_hg19_wgEncodeUwHistoneWi38H3k04me3OhtamStdRawRep1.bigWig 61.1 Mb (ftp)(http) BIGWIG
GSM945215_hg19_wgEncodeUwHistoneWi38H3k04me3OhtamStdRawRep2.bigWig 81.3 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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