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Sample GSM945211 Query DataSets for GSM945211
Status Public on Jun 07, 2012
Title UW_ChipSeq_HepG2_H3K36me3
Sample type SRA
 
Source name HepG2
Organism Homo sapiens
Characteristics lab: UW
lab description: Stamatoyannopoulous - University of Washington
datatype: ChipSeq
datatype description: Chromatin IP Sequencing
cell: HepG2
cell organism: human
cell description: hepatocellular carcinoma
cell karyotype: cancer
cell lineage: endoderm
cell sex: M
antibody: H3K36me3
antibody antibodydescription: rabbit polyclonal. Antibody Target: H3K36me3
antibody targetdescription: Histone H3 (tri-methyl K36). Marks regions of RNAPII elongation, including coding and non-coding transcripts.
antibody vendorname: Abcam
antibody vendorid: ab9050
treatment: None
treatment description: No special treatment or protocol applies
control: std
control description: Standard input signal for most experiments.
controlid: wgEncodeEH000470
labexpid: DS12207
labversion: Bowtie 0.12.5
replicate: 1
Biomaterial provider ATCC
Treatment protocol None
Growth protocol HepG2_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeUwHistone
 
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina Genome Analyzer
 
Data processing http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeUwHistone
 
Submission date Jun 07, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL9052
Series (2)
GSE35583 Histone Modifications by ChIP-seq from ENCODE/University of Washington
GSE51334 DNA replication-timing boundaries separate stable chromosome domains with cell-type-specific functions
Relations
SRA SRX189994
BioSample SAMN01731473
Named Annotation GSM945211_hg19_wgEncodeUwHistoneHepg2H3k36me3StdRawRep1.bigWig
Named Annotation GSM945211_hg19_wgEncodeUwHistoneHepg2H3k36me3StdRawRep2.bigWig

Supplementary file Size Download File type/resource
GSM945211_hg19_wgEncodeUwHistoneHepg2H3k36me3StdHotspotsRep1.broadPeak.gz 4.8 Mb (ftp)(http) BROADPEAK
GSM945211_hg19_wgEncodeUwHistoneHepg2H3k36me3StdHotspotsRep2.broadPeak.gz 4.8 Mb (ftp)(http) BROADPEAK
GSM945211_hg19_wgEncodeUwHistoneHepg2H3k36me3StdPkRep1.narrowPeak.gz 715.0 Kb (ftp)(http) NARROWPEAK
GSM945211_hg19_wgEncodeUwHistoneHepg2H3k36me3StdPkRep2.narrowPeak.gz 455.4 Kb (ftp)(http) NARROWPEAK
GSM945211_hg19_wgEncodeUwHistoneHepg2H3k36me3StdRawRep1.bigWig 125.8 Mb (ftp)(http) BIGWIG
GSM945211_hg19_wgEncodeUwHistoneHepg2H3k36me3StdRawRep2.bigWig 127.5 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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