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Sample GSM945209 Query DataSets for GSM945209
Status Public on Jun 07, 2012
Title UW_ChipSeq_SK-N-SH_RA_H3K36me3
Sample type SRA
Source name SK-N-SH_RA
Organism Homo sapiens
Characteristics lab: UW
lab description: Stamatoyannopoulous - University of Washington
datatype: ChipSeq
datatype description: Chromatin IP Sequencing
cell: SK-N-SH_RA
cell organism: human
cell description: neuroblastoma cell line, treatment: differentiated with retinoic acid, (Biedler, et al. Morphology and Growth, Tumorigenicity, and Cytogenetics of Human Neuroblastoma Cells in Continuous Culture. Cancer Research 33, 2643-2652, November 1973.)
cell karyotype: cancer
cell lineage: ectoderm
cell sex: F
antibody: H3K36me3
antibody antibodydescription: rabbit polyclonal. Antibody Target: H3K36me3
antibody targetdescription: Histone H3 (tri-methyl K36). Marks regions of RNAPII elongation, including coding and non-coding transcripts.
antibody vendorname: Abcam
antibody vendorid: ab9050
treatment: None
treatment description: No special treatment or protocol applies
control: std
control description: Standard input signal for most experiments.
controlid: wgEncodeEH000474
labexpid: DS12404
labversion: Bowtie 0.12.5
replicate: 1
Biomaterial provider ATCC
Treatment protocol None
Growth protocol Stam_15_protocols.pdf
Extracted molecule genomic DNA
Extraction protocol Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina Genome Analyzer
Data processing
Submission date Jun 07, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL9052
Series (1)
GSE35583 Histone Modifications by ChIP-seq from ENCODE/University of Washington
SRA SRX189992
BioSample SAMN01731471
Named Annotation GSM945209_hg19_wgEncodeUwHistoneSknshraH3k36me3StdRawRep1.bigWig
Named Annotation GSM945209_hg19_wgEncodeUwHistoneSknshraH3k36me3StdRawRep2.bigWig

Supplementary file Size Download File type/resource
GSM945209_hg19_wgEncodeUwHistoneSknshraH3k36me3StdHotspotsRep1.broadPeak.gz 4.9 Mb (ftp)(http) BROADPEAK
GSM945209_hg19_wgEncodeUwHistoneSknshraH3k36me3StdHotspotsRep2.broadPeak.gz 4.6 Mb (ftp)(http) BROADPEAK
GSM945209_hg19_wgEncodeUwHistoneSknshraH3k36me3StdPkRep1.narrowPeak.gz 413.8 Kb (ftp)(http) NARROWPEAK
GSM945209_hg19_wgEncodeUwHistoneSknshraH3k36me3StdPkRep2.narrowPeak.gz 319.1 Kb (ftp)(http) NARROWPEAK
GSM945209_hg19_wgEncodeUwHistoneSknshraH3k36me3StdRawRep1.bigWig 118.8 Mb (ftp)(http) BIGWIG
GSM945209_hg19_wgEncodeUwHistoneSknshraH3k36me3StdRawRep2.bigWig 116.4 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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