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Sample GSM945204 Query DataSets for GSM945204
Status Public on Jun 07, 2012
Title UW_ChipSeq_BJ_H3K27me3
Sample type SRA
Source name BJ
Organism Homo sapiens
Characteristics lab: UW
lab description: Stamatoyannopoulous - University of Washington
datatype: ChipSeq
datatype description: Chromatin IP Sequencing
cell: BJ
cell organism: human
cell description: skin fibroblast, "The line was established from skin taken from normal foreskin." - ATCC. (PMID: 9916803)
cell karyotype: normal
cell sex: M
antibody: H3K27me3
antibody antibodydescription: rabbit polyclonal. Antibody Target: H3K27me3
antibody targetdescription: Histone H3 (tri-methyl K27). Marks promoters that are silenced by Polycomb proteins in a given lineage; large domains are found at inactive developmental loci.
antibody vendorname: Millipore
antibody vendorid: 07-449
treatment: None
treatment description: No special treatment or protocol applies
control: std
control description: Standard input signal for most experiments.
controlid: wgEncodeEH000453
labexpid: DS12194
labversion: Bowtie 0.12.5
replicate: 1
Biomaterial provider ATCC
Treatment protocol None
Growth protocol BJ_Stam_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina Genome Analyzer
Data processing
Submission date Jun 07, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL9052
Series (2)
GSE35583 Histone Modifications by ChIP-seq from ENCODE/University of Washington
GSE51334 DNA replication-timing boundaries separate stable chromosome domains with cell-type-specific functions
SRA SRX189987
BioSample SAMN01731466
Named Annotation GSM945204_hg19_wgEncodeUwHistoneBjH3k27me3StdRawRep1.bigWig
Named Annotation GSM945204_hg19_wgEncodeUwHistoneBjH3k27me3StdRawRep2.bigWig

Supplementary file Size Download File type/resource
GSM945204_hg19_wgEncodeUwHistoneBjH3k27me3StdHotspotsRep1.broadPeak.gz 4.5 Mb (ftp)(http) BROADPEAK
GSM945204_hg19_wgEncodeUwHistoneBjH3k27me3StdHotspotsRep2.broadPeak.gz 5.4 Mb (ftp)(http) BROADPEAK
GSM945204_hg19_wgEncodeUwHistoneBjH3k27me3StdPkRep1.narrowPeak.gz 256.9 Kb (ftp)(http) NARROWPEAK
GSM945204_hg19_wgEncodeUwHistoneBjH3k27me3StdPkRep2.narrowPeak.gz 496.1 Kb (ftp)(http) NARROWPEAK
GSM945204_hg19_wgEncodeUwHistoneBjH3k27me3StdRawRep1.bigWig 113.9 Mb (ftp)(http) BIGWIG
GSM945204_hg19_wgEncodeUwHistoneBjH3k27me3StdRawRep2.bigWig 133.7 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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