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Sample GSM945203 Query DataSets for GSM945203
Status Public on Jun 07, 2012
Title UW_ChipSeq_Caco-2_H3K27me3
Sample type SRA
 
Source name Caco-2
Organism Homo sapiens
Characteristics lab: UW
lab description: Stamatoyannopoulous - University of Washington
datatype: ChipSeq
datatype description: Chromatin IP Sequencing
cell: Caco-2
cell organism: human
cell description: colorectal adenocarcinoma. (PMID: 1939345)
cell karyotype: cancer
cell lineage: endoderm
cell sex: M
antibody: H3K27me3
antibody antibodydescription: rabbit polyclonal. Antibody Target: H3K27me3
antibody targetdescription: Histone H3 (tri-methyl K27). Marks promoters that are silenced by Polycomb proteins in a given lineage; large domains are found at inactive developmental loci.
antibody vendorname: Millipore
antibody vendorid: 07-449
treatment: None
treatment description: No special treatment or protocol applies
control: std
control description: Standard input signal for most experiments.
controlid: wgEncodeEH000454
labexpid: DS12221
labversion: Bowtie 0.12.5
replicate: 1
Biomaterial provider ATCC
Treatment protocol None
Growth protocol Stam_15_protocols.pdf
Extracted molecule genomic DNA
Extraction protocol Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeUwHistone
 
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina Genome Analyzer
 
Data processing http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeUwHistone
 
Submission date Jun 07, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL9052
Series (1)
GSE35583 Histone Modifications by ChIP-seq from ENCODE/University of Washington
Relations
SRA SRX189986
BioSample SAMN01731465
Named Annotation GSM945203_hg19_wgEncodeUwHistoneCaco2H3k27me3StdRawRep1.bigWig
Named Annotation GSM945203_hg19_wgEncodeUwHistoneCaco2H3k27me3StdRawRep2.bigWig

Supplementary file Size Download File type/resource
GSM945203_hg19_wgEncodeUwHistoneCaco2H3k27me3StdHotspotsRep1.broadPeak.gz 4.5 Mb (ftp)(http) BROADPEAK
GSM945203_hg19_wgEncodeUwHistoneCaco2H3k27me3StdHotspotsRep2.broadPeak.gz 4.0 Mb (ftp)(http) BROADPEAK
GSM945203_hg19_wgEncodeUwHistoneCaco2H3k27me3StdPkRep1.narrowPeak.gz 80.4 Kb (ftp)(http) NARROWPEAK
GSM945203_hg19_wgEncodeUwHistoneCaco2H3k27me3StdPkRep2.narrowPeak.gz 39.0 Kb (ftp)(http) NARROWPEAK
GSM945203_hg19_wgEncodeUwHistoneCaco2H3k27me3StdRawRep1.bigWig 149.6 Mb (ftp)(http) BIGWIG
GSM945203_hg19_wgEncodeUwHistoneCaco2H3k27me3StdRawRep2.bigWig 137.8 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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