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Sample GSM945202 Query DataSets for GSM945202
Status Public on Jun 07, 2012
Title UW_ChipSeq_SK-N-SH_RA_H3K4me3
Sample type SRA
 
Source name SK-N-SH_RA
Organism Homo sapiens
Characteristics lab: UW
lab description: Stamatoyannopoulous - University of Washington
datatype: ChipSeq
datatype description: Chromatin IP Sequencing
cell: SK-N-SH_RA
cell organism: human
cell description: neuroblastoma cell line, treatment: differentiated with retinoic acid, (Biedler, et al. Morphology and Growth, Tumorigenicity, and Cytogenetics of Human Neuroblastoma Cells in Continuous Culture. Cancer Research 33, 2643-2652, November 1973.)
cell karyotype: cancer
cell lineage: ectoderm
cell sex: F
antibody: H3K4me3
antibody antibodydescription: rabbit polyclonal. Antibody Target: H3K4me3
antibody targetdescription: Histone H3 (tri methyl K4). Marks promoters that are active or poised to be activated.
antibody vendorname: Millipore
antibody vendorid: 07-473
treatment: None
treatment description: No special treatment or protocol applies
control: std
control description: Standard input signal for most experiments.
controlid: wgEncodeEH000474
labexpid: DS11782
labversion: Bowtie 0.12.5
replicate: 1
Biomaterial provider ATCC
Treatment protocol None
Growth protocol Stam_15_protocols.pdf
Extracted molecule genomic DNA
Extraction protocol Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeUwHistone
 
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina Genome Analyzer
 
Data processing http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeUwHistone
 
Submission date Jun 07, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL9052
Series (1)
GSE35583 Histone Modifications by ChIP-seq from ENCODE/University of Washington
Relations
SRA SRX189985
BioSample SAMN01731464
Named Annotation GSM945202_hg19_wgEncodeUwHistoneSknshraH3k4me3StdRawRep1.bigWig
Named Annotation GSM945202_hg19_wgEncodeUwHistoneSknshraH3k4me3StdRawRep2.bigWig

Supplementary file Size Download File type/resource
GSM945202_hg19_wgEncodeUwHistoneSknshraH3k4me3StdHotspotsRep1.broadPeak.gz 547.3 Kb (ftp)(http) BROADPEAK
GSM945202_hg19_wgEncodeUwHistoneSknshraH3k4me3StdHotspotsRep2.broadPeak.gz 544.7 Kb (ftp)(http) BROADPEAK
GSM945202_hg19_wgEncodeUwHistoneSknshraH3k4me3StdPkRep1.narrowPeak.gz 588.0 Kb (ftp)(http) NARROWPEAK
GSM945202_hg19_wgEncodeUwHistoneSknshraH3k4me3StdPkRep2.narrowPeak.gz 595.0 Kb (ftp)(http) NARROWPEAK
GSM945202_hg19_wgEncodeUwHistoneSknshraH3k4me3StdRawRep1.bigWig 44.5 Mb (ftp)(http) BIGWIG
GSM945202_hg19_wgEncodeUwHistoneSknshraH3k4me3StdRawRep2.bigWig 41.0 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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