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Sample GSM945196 Query DataSets for GSM945196
Status Public on Jun 07, 2012
Title UW_ChipSeq_GM12878_H3K27me3
Sample type SRA
Source name GM12878
Organism Homo sapiens
Characteristics lab: UW
lab description: Stamatoyannopoulous - University of Washington
datatype: ChipSeq
datatype description: Chromatin IP Sequencing
cell: GM12878
cell organism: human
cell description: B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus
cell karyotype: normal
cell lineage: mesoderm
cell sex: F
antibody: H3K27me3
antibody antibodydescription: rabbit polyclonal. Antibody Target: H3K27me3
antibody targetdescription: Histone H3 (tri-methyl K27). Marks promoters that are silenced by Polycomb proteins in a given lineage; large domains are found at inactive developmental loci.
antibody vendorname: Millipore
antibody vendorid: 07-449
treatment: None
treatment description: No special treatment or protocol applies
control: std
control description: Standard input signal for most experiments.
controlid: wgEncodeEH000463
labexpid: DS12182
labversion: Bowtie 0.12.5
replicate: 1
Biomaterial provider Coriell;
Treatment protocol None
Growth protocol GM12878_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina Genome Analyzer
Data processing
Submission date Jun 07, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL9052
Series (2)
GSE35583 Histone Modifications by ChIP-seq from ENCODE/University of Washington
GSE51334 DNA replication-timing boundaries separate stable chromosome domains with cell-type-specific functions
SRA SRX189979
BioSample SAMN01731458
Named Annotation GSM945196_hg19_wgEncodeUwHistoneGm12878H3k27me3StdRawRep1.bigWig
Named Annotation GSM945196_hg19_wgEncodeUwHistoneGm12878H3k27me3StdRawRep2.bigWig

Supplementary file Size Download File type/resource
GSM945196_hg19_wgEncodeUwHistoneGm12878H3k27me3StdHotspotsRep1.broadPeak.gz 5.0 Mb (ftp)(http) BROADPEAK
GSM945196_hg19_wgEncodeUwHistoneGm12878H3k27me3StdHotspotsRep2.broadPeak.gz 5.6 Mb (ftp)(http) BROADPEAK
GSM945196_hg19_wgEncodeUwHistoneGm12878H3k27me3StdPkRep1.narrowPeak.gz 170.5 Kb (ftp)(http) NARROWPEAK
GSM945196_hg19_wgEncodeUwHistoneGm12878H3k27me3StdPkRep2.narrowPeak.gz 337.9 Kb (ftp)(http) NARROWPEAK
GSM945196_hg19_wgEncodeUwHistoneGm12878H3k27me3StdRawRep1.bigWig 119.8 Mb (ftp)(http) BIGWIG
GSM945196_hg19_wgEncodeUwHistoneGm12878H3k27me3StdRawRep2.bigWig 145.3 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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