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Sample GSM945191 Query DataSets for GSM945191
Status Public on Jun 07, 2012
Title UW_ChipSeq_H7-hESC_H3K4me3_diffProtA_2d
Sample type SRA
 
Source name H7-hESC
Organism Homo sapiens
Characteristics donor_id: ENCDO221AAA
biomaterial_type: in vitro differentiated cells
cell_type: cardiac mesoderm
lab: UW
lab description: Stamatoyannopoulous - University of Washington
datatype: ChipSeq
datatype description: Chromatin IP Sequencing
cell: H7-hESC
cell organism: human
cell description: undifferentiated embryonic stem cells
cell lineage: inner cell mass
cell sex: U
antibody: H3K4me3
antibody antibodydescription: rabbit polyclonal. Antibody Target: H3K4me3
antibody targetdescription: Histone H3 (tri methyl K4). Marks promoters that are active or poised to be activated.
antibody vendorname: Millipore
antibody vendorid: 07-473
treatment: diffProtA_2d
treatment description: H7 embryoid bodies differentiation protocol for cardiomyocyte, endothelial, smooth muscle, with markers cardiac troponin T (cTnT), CD31/PECAM1, smooth muscle alpha actin (SMA), respectively, using proteins from bone morphogenic protein 4 (BMP4), activin A and basic fibroblast growth factor (bFGF) for 2 days, lineage: mesoderm
control: std
control description: Standard input signal for most experiments.
controlid: wgEncodeEH002543
labexpid: DS14704
labversion: Bowtie 0.12.7
replicate: 1
Biomaterial provider WiCell
Treatment protocol diffProtA_2d
Extracted molecule genomic DNA
Extraction protocol Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeUwHistone
 
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina Genome Analyzer
 
Data processing http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeUwHistone
 
Submission date Jun 07, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL9052
Series (1)
GSE35583 Histone Modifications by ChIP-seq from ENCODE/University of Washington
Relations
SRA SRX189974
BioSample SAMN01731453
Named Annotation GSM945191_hg19_wgEncodeUwHistoneH7esH3k04me3StdDiffa2dRawRep1.bigWig
Named Annotation GSM945191_hg19_wgEncodeUwHistoneH7esH3k04me3StdDiffa2dRawRep2.bigWig

Supplementary file Size Download File type/resource
GSM945191_hg19_wgEncodeUwHistoneH7esH3k04me3StdDiffa2dHotspotsRep1.broadPeak.gz 1.1 Mb (ftp)(http) BROADPEAK
GSM945191_hg19_wgEncodeUwHistoneH7esH3k04me3StdDiffa2dHotspotsRep2.broadPeak.gz 1.2 Mb (ftp)(http) BROADPEAK
GSM945191_hg19_wgEncodeUwHistoneH7esH3k04me3StdDiffa2dPkRep1.narrowPeak.gz 734.5 Kb (ftp)(http) NARROWPEAK
GSM945191_hg19_wgEncodeUwHistoneH7esH3k04me3StdDiffa2dPkRep2.narrowPeak.gz 759.6 Kb (ftp)(http) NARROWPEAK
GSM945191_hg19_wgEncodeUwHistoneH7esH3k04me3StdDiffa2dRawRep1.bigWig 96.4 Mb (ftp)(http) BIGWIG
GSM945191_hg19_wgEncodeUwHistoneH7esH3k04me3StdDiffa2dRawRep2.bigWig 101.7 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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