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Sample GSM945179 Query DataSets for GSM945179
Status Public on Jun 07, 2012
Title UW_ChipSeq_GM06990_H3K4me3
Sample type SRA
 
Source name GM06990
Organism Homo sapiens
Characteristics lab: UW
lab description: Stamatoyannopoulous - University of Washington
datatype: ChipSeq
datatype description: Chromatin IP Sequencing
cell: GM06990
cell organism: human
cell description: B-lymphocyte, lymphoblastoid, International HapMap Project, CEPH/Utah, treatment: Epstein-Barr Virus transformed
cell karyotype: normal
cell lineage: mesoderm
cell sex: F
antibody: H3K4me3
antibody antibodydescription: rabbit polyclonal. Antibody Target: H3K4me3
antibody targetdescription: Histone H3 (tri methyl K4). Marks promoters that are active or poised to be activated.
antibody vendorname: Millipore
antibody vendorid: 07-473
treatment: None
treatment description: No special treatment or protocol applies
control: std
control description: Standard input signal for most experiments.
controlid: wgEncodeEH000455
labexpid: DS11521
labversion: Bowtie 0.12.5
replicate: 1
Biomaterial provider Coriell; http://ccr.coriell.org/Sections/Search/Search.aspx?PgId=165&q=GM06990
Treatment protocol None
Growth protocol Stam_15_protocols.pdf
Extracted molecule genomic DNA
Extraction protocol Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeUwHistone
 
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina Genome Analyzer
 
Data processing http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeUwHistone
 
Submission date Jun 07, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL9052
Series (2)
GSE35583 Histone Modifications by ChIP-seq from ENCODE/University of Washington
GSE51334 DNA replication-timing boundaries separate stable chromosome domains with cell-type-specific functions
Relations
SRA SRX189962
BioSample SAMN01731441
Named Annotation GSM945179_hg19_wgEncodeUwHistoneGm06990H3k4me3StdRawRep1.bigWig
Named Annotation GSM945179_hg19_wgEncodeUwHistoneGm06990H3k4me3StdRawRep2.bigWig

Supplementary file Size Download File type/resource
GSM945179_hg19_wgEncodeUwHistoneGm06990H3k4me3StdHotspotsRep1.broadPeak.gz 806.3 Kb (ftp)(http) BROADPEAK
GSM945179_hg19_wgEncodeUwHistoneGm06990H3k4me3StdHotspotsRep2.broadPeak.gz 869.9 Kb (ftp)(http) BROADPEAK
GSM945179_hg19_wgEncodeUwHistoneGm06990H3k4me3StdPkRep1.narrowPeak.gz 711.3 Kb (ftp)(http) NARROWPEAK
GSM945179_hg19_wgEncodeUwHistoneGm06990H3k4me3StdPkRep2.narrowPeak.gz 799.0 Kb (ftp)(http) NARROWPEAK
GSM945179_hg19_wgEncodeUwHistoneGm06990H3k4me3StdRawRep1.bigWig 48.0 Mb (ftp)(http) BIGWIG
GSM945179_hg19_wgEncodeUwHistoneGm06990H3k4me3StdRawRep2.bigWig 67.5 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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