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Sample GSM945179 Query DataSets for GSM945179
Status Public on Jun 07, 2012
Title UW_ChipSeq_GM06990_H3K4me3
Sample type SRA
Source name GM06990
Organism Homo sapiens
Characteristics lab: UW
lab description: Stamatoyannopoulous - University of Washington
datatype: ChipSeq
datatype description: Chromatin IP Sequencing
cell: GM06990
cell organism: human
cell description: B-lymphocyte, lymphoblastoid, International HapMap Project, CEPH/Utah, treatment: Epstein-Barr Virus transformed
cell karyotype: normal
cell lineage: mesoderm
cell sex: F
antibody: H3K4me3
antibody antibodydescription: rabbit polyclonal. Antibody Target: H3K4me3
antibody targetdescription: Histone H3 (tri methyl K4). Marks promoters that are active or poised to be activated.
antibody vendorname: Millipore
antibody vendorid: 07-473
treatment: None
treatment description: No special treatment or protocol applies
control: std
control description: Standard input signal for most experiments.
controlid: wgEncodeEH000455
labexpid: DS11521
labversion: Bowtie 0.12.5
replicate: 1
Biomaterial provider Coriell;
Treatment protocol None
Growth protocol Stam_15_protocols.pdf
Extracted molecule genomic DNA
Extraction protocol Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina Genome Analyzer
Data processing
Submission date Jun 07, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL9052
Series (2)
GSE35583 Histone Modifications by ChIP-seq from ENCODE/University of Washington
GSE51334 DNA replication-timing boundaries separate stable chromosome domains with cell-type-specific functions
SRA SRX189962
BioSample SAMN01731441
Named Annotation GSM945179_hg19_wgEncodeUwHistoneGm06990H3k4me3StdRawRep1.bigWig
Named Annotation GSM945179_hg19_wgEncodeUwHistoneGm06990H3k4me3StdRawRep2.bigWig

Supplementary file Size Download File type/resource
GSM945179_hg19_wgEncodeUwHistoneGm06990H3k4me3StdHotspotsRep1.broadPeak.gz 806.3 Kb (ftp)(http) BROADPEAK
GSM945179_hg19_wgEncodeUwHistoneGm06990H3k4me3StdHotspotsRep2.broadPeak.gz 869.9 Kb (ftp)(http) BROADPEAK
GSM945179_hg19_wgEncodeUwHistoneGm06990H3k4me3StdPkRep1.narrowPeak.gz 711.3 Kb (ftp)(http) NARROWPEAK
GSM945179_hg19_wgEncodeUwHistoneGm06990H3k4me3StdPkRep2.narrowPeak.gz 799.0 Kb (ftp)(http) NARROWPEAK
GSM945179_hg19_wgEncodeUwHistoneGm06990H3k4me3StdRawRep1.bigWig 48.0 Mb (ftp)(http) BIGWIG
GSM945179_hg19_wgEncodeUwHistoneGm06990H3k4me3StdRawRep2.bigWig 67.5 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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