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Sample GSM945177 Query DataSets for GSM945177
Status Public on Jun 07, 2012
Title UW_ChipSeq_AG04450_H3K4me3
Sample type SRA
Source name AG04450
Organism Homo sapiens
Characteristics lab: UW
lab description: Stamatoyannopoulous - University of Washington
datatype: ChipSeq
datatype description: Chromatin IP Sequencing
cell: AG04450
cell organism: human
cell description: fetal lung fibroblast
cell karyotype: normal
cell lineage: endoderm
cell sex: M
antibody: H3K4me3
antibody antibodydescription: rabbit polyclonal. Antibody Target: H3K4me3
antibody targetdescription: Histone H3 (tri methyl K4). Marks promoters that are active or poised to be activated.
antibody vendorname: Millipore
antibody vendorid: 07-473
treatment: None
treatment description: No special treatment or protocol applies
control: std
control description: Standard input signal for most experiments.
controlid: wgEncodeEH000930
labexpid: DS15740
labversion: Bowtie 0.12.7
replicate: 1
Biomaterial provider Coriell;
Treatment protocol None
Growth protocol AG04450_Stam_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina Genome Analyzer
Data processing
Submission date Jun 07, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL9052
Series (1)
GSE35583 Histone Modifications by ChIP-seq from ENCODE/University of Washington
SRA SRX189960
BioSample SAMN01731439
Named Annotation GSM945177_hg19_wgEncodeUwHistoneAg04450H3k4me3StdRawRep1.bigWig
Named Annotation GSM945177_hg19_wgEncodeUwHistoneAg04450H3k4me3StdRawRep2.bigWig

Supplementary file Size Download File type/resource
GSM945177_hg19_wgEncodeUwHistoneAg04450H3k4me3StdHotspotsRep1.broadPeak.gz 850.4 Kb (ftp)(http) BROADPEAK
GSM945177_hg19_wgEncodeUwHistoneAg04450H3k4me3StdHotspotsRep2.broadPeak.gz 942.6 Kb (ftp)(http) BROADPEAK
GSM945177_hg19_wgEncodeUwHistoneAg04450H3k4me3StdPkRep1.narrowPeak.gz 815.7 Kb (ftp)(http) NARROWPEAK
GSM945177_hg19_wgEncodeUwHistoneAg04450H3k4me3StdPkRep2.narrowPeak.gz 758.4 Kb (ftp)(http) NARROWPEAK
GSM945177_hg19_wgEncodeUwHistoneAg04450H3k4me3StdRawRep1.bigWig 91.9 Mb (ftp)(http) BIGWIG
GSM945177_hg19_wgEncodeUwHistoneAg04450H3k4me3StdRawRep2.bigWig 90.1 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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