GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Sample GSM945175 Query DataSets for GSM945175
Status Public on Jun 07, 2012
Title UW_ChipSeq_NHEK_H3K4me3
Sample type SRA
Source name NHEK
Organism Homo sapiens
Characteristics lab: UW
lab description: Stamatoyannopoulous - University of Washington
datatype: ChipSeq
datatype description: Chromatin IP Sequencing
cell: NHEK
cell organism: human
cell description: epidermal keratinocytes
cell karyotype: normal
cell lineage: ectoderm
cell sex: U
antibody: H3K4me3
antibody antibodydescription: rabbit polyclonal. Antibody Target: H3K4me3
antibody targetdescription: Histone H3 (tri methyl K4). Marks promoters that are active or poised to be activated.
antibody vendorname: Millipore
antibody vendorid: 07-473
treatment: None
treatment description: No special treatment or protocol applies
control: std
control description: Standard input signal for most experiments.
controlid: wgEncodeEH000472
labexpid: DS11559
labversion: Bowtie 0.12.5
replicate: 1
Biomaterial provider Lonza
Treatment protocol None
Growth protocol Keratinocyte_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina Genome Analyzer
Data processing
Submission date Jun 07, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL9052
Series (2)
GSE35583 Histone Modifications by ChIP-seq from ENCODE/University of Washington
GSE51334 DNA replication-timing boundaries separate stable chromosome domains with cell-type-specific functions
SRA SRX189958
BioSample SAMN01731437
Named Annotation GSM945175_hg19_wgEncodeUwHistoneNhekH3k4me3StdRawRep1.bigWig
Named Annotation GSM945175_hg19_wgEncodeUwHistoneNhekH3k4me3StdRawRep2.bigWig

Supplementary file Size Download File type/resource
GSM945175_hg19_wgEncodeUwHistoneNhekH3k4me3StdHotspotsRep1.broadPeak.gz 528.2 Kb (ftp)(http) BROADPEAK
GSM945175_hg19_wgEncodeUwHistoneNhekH3k4me3StdHotspotsRep2.broadPeak.gz 560.3 Kb (ftp)(http) BROADPEAK
GSM945175_hg19_wgEncodeUwHistoneNhekH3k4me3StdPkRep1.narrowPeak.gz 534.9 Kb (ftp)(http) NARROWPEAK
GSM945175_hg19_wgEncodeUwHistoneNhekH3k4me3StdPkRep2.narrowPeak.gz 549.5 Kb (ftp)(http) NARROWPEAK
GSM945175_hg19_wgEncodeUwHistoneNhekH3k4me3StdRawRep1.bigWig 46.8 Mb (ftp)(http) BIGWIG
GSM945175_hg19_wgEncodeUwHistoneNhekH3k4me3StdRawRep2.bigWig 49.9 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap