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Sample GSM945168 Query DataSets for GSM945168
Status Public on Jun 07, 2012
Title UW_ChipSeq_AG09309_H3K4me3
Sample type SRA
 
Source name AG09309
Organism Homo sapiens
Characteristics lab: UW
lab description: Stamatoyannopoulous - University of Washington
datatype: ChipSeq
datatype description: Chromatin IP Sequencing
cell: AG09309
cell organism: human
cell description: adult toe fibroblast from apparently healthy 21 year old, "7% of the cells examined showing random chromosome loss/gain" -Coriell
cell sex: F
antibody: H3K4me3
antibody antibodydescription: rabbit polyclonal. Antibody Target: H3K4me3
antibody targetdescription: Histone H3 (tri methyl K4). Marks promoters that are active or poised to be activated.
antibody vendorname: Millipore
antibody vendorid: 07-473
treatment: None
treatment description: No special treatment or protocol applies
control: std
control description: Standard input signal for most experiments.
controlid: wgEncodeEH000932
labexpid: DS16034
labversion: Bowtie 0.12.7
replicate: 1
Biomaterial provider Coriell; http://ccr.coriell.org/Sections/Search/Search.aspx?PgId=165&q=AG09309
Treatment protocol None
Growth protocol AG09309_Stam_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeUwHistone
 
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina Genome Analyzer
 
Data processing http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeUwHistone
 
Submission date Jun 07, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL9052
Series (1)
GSE35583 Histone Modifications by ChIP-seq from ENCODE/University of Washington
Relations
SRA SRX189951
BioSample SAMN01731430
Named Annotation GSM945168_hg19_wgEncodeUwHistoneAg09309H3k4me3StdRawRep1.bigWig
Named Annotation GSM945168_hg19_wgEncodeUwHistoneAg09309H3k4me3StdRawRep2.bigWig

Supplementary file Size Download File type/resource
GSM945168_hg19_wgEncodeUwHistoneAg09309H3k4me3StdHotspotsRep1.broadPeak.gz 713.5 Kb (ftp)(http) BROADPEAK
GSM945168_hg19_wgEncodeUwHistoneAg09309H3k4me3StdHotspotsRep2.broadPeak.gz 869.7 Kb (ftp)(http) BROADPEAK
GSM945168_hg19_wgEncodeUwHistoneAg09309H3k4me3StdPkRep1.narrowPeak.gz 674.8 Kb (ftp)(http) NARROWPEAK
GSM945168_hg19_wgEncodeUwHistoneAg09309H3k4me3StdPkRep2.narrowPeak.gz 701.6 Kb (ftp)(http) NARROWPEAK
GSM945168_hg19_wgEncodeUwHistoneAg09309H3k4me3StdRawRep1.bigWig 56.4 Mb (ftp)(http) BIGWIG
GSM945168_hg19_wgEncodeUwHistoneAg09309H3k4me3StdRawRep2.bigWig 58.3 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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