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GEO accession:
Sample GSM94246
Query DataSets for GSM94246
Status
Public on Mar 16, 2006
Title
DS-AML patient sample_DS-AML060
Sample type
RNA
Source name
bone marrow or peripheral blood
Organism
Homo sapiens
Characteristics
diagnostic sample
Extracted molecule
total RNA
Extraction protocol
mononuclear cells after Ficol gradient, RNA extract with TRIZOL and promega SV column
Label
biotin
Label protocol
2-10 µg of total RNA was processed to produce biotinylated cRNA targets.
Hybridization protocol
standard Affymetrix procedures
Scan protocol
standard Affymetrix procedures
Description
AMKL diagnostic sample
Data processing
Affymetrix Microarray Suite version 5.0
Submission date
Jan 30, 2006
Last update date
Mar 16, 2006
Contact name
Jean-Pierre Bourquin
E-mail(s)
jean-pierre.bourquin@kispi.unizh.ch
Phone
+41 44 266 7304
Fax
+41 44 266 7171
Organization name
University Children's Hospital Zurich
Department
Pediatric Oncology
Lab
Molecular Oncology
Street address
Steinwiesstrasse 75
City
Zurich
ZIP/Postal code
8032
Country
Switzerland
Platform ID
GPL96
Series (1)
GSE4119
Expression profiling of acute megakaryoblastic leukemia
Data table header descriptions
ID_REF
VALUE
MAS5-calculated Signal intensity
ABS_CALL
the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE
'detection p-value', p-value that indicates the significance level of the detection call
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
AFFX-BioB-5_at
111.1
P
0.001796
AFFX-BioB-M_at
228
P
0.000581
AFFX-BioB-3_at
126.6
P
0.001246
AFFX-BioC-5_at
405.5
P
0.00011
AFFX-BioC-3_at
335.5
P
0.000081
AFFX-BioDn-5_at
216
P
0.00011
AFFX-BioDn-3_at
2167.5
P
0.00007
AFFX-CreX-5_at
4741.9
P
0.000044
AFFX-CreX-3_at
8009.1
P
0.000044
AFFX-DapX-5_at
7.9
A
0.227636
AFFX-DapX-M_at
10.2
A
0.300606
AFFX-DapX-3_at
2.5
A
0.941556
AFFX-LysX-5_at
1.8
A
0.814869
AFFX-LysX-M_at
10.2
A
0.631562
AFFX-LysX-3_at
5.9
A
0.382599
AFFX-PheX-5_at
1.9
A
0.921998
AFFX-PheX-M_at
3.5
A
0.783476
AFFX-PheX-3_at
7.6
A
0.672921
AFFX-ThrX-5_at
3.2
A
0.783476
AFFX-ThrX-M_at
8.7
A
0.52976
Total number of rows:
22283
Table truncated, full table size
582 Kbytes
.
Supplementary data files not provided
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