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GEO accession:
Sample GSM94242
Query DataSets for GSM94242
Status
Public on Mar 16, 2006
Title
AMKL patient sample_AMKL049
Sample type
RNA
Source name
bone marrow or peripheral blood
Organism
Homo sapiens
Characteristics
diagnostic sample
Extracted molecule
total RNA
Extraction protocol
mononuclear cells after Ficol gradient, RNA extract with TRIZOL and promega SV column
Label
biotin
Label protocol
2-10 µg of total RNA was processed to produce biotinylated cRNA targets.
Hybridization protocol
standard Affymetrix procedures
Scan protocol
standard Affymetrix procedures
Description
AMKL diagnostic sample
Data processing
Affymetrix Microarray Suite version 5.0
Submission date
Jan 30, 2006
Last update date
Mar 16, 2006
Contact name
Jean-Pierre Bourquin
E-mail(s)
jean-pierre.bourquin@kispi.unizh.ch
Phone
+41 44 266 7304
Fax
+41 44 266 7171
Organization name
University Children's Hospital Zurich
Department
Pediatric Oncology
Lab
Molecular Oncology
Street address
Steinwiesstrasse 75
City
Zurich
ZIP/Postal code
8032
Country
Switzerland
Platform ID
GPL96
Series (1)
GSE4119
Expression profiling of acute megakaryoblastic leukemia
Data table header descriptions
ID_REF
VALUE
MAS5-calculated Signal intensity
ABS_CALL
the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE
'detection p-value', p-value that indicates the significance level of the detection call
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
AFFX-BioB-5_at
71.4
P
0.006871
AFFX-BioB-M_at
117.7
P
0.002023
AFFX-BioB-3_at
59.5
P
0.004017
AFFX-BioC-5_at
220.3
P
2.97E-04
AFFX-BioC-3_at
154.3
P
1.10E-04
AFFX-BioDn-5_at
128.7
P
9.72E-04
AFFX-BioDn-3_at
1387.7
P
1.69E-04
AFFX-CreX-5_at
2224.2
P
4.40E-05
AFFX-CreX-3_at
4172.2
P
4.40E-05
AFFX-DapX-5_at
3.1
A
0.51489
AFFX-DapX-M_at
14.3
A
0.250796
AFFX-DapX-3_at
2.4
A
0.963431
AFFX-LysX-5_at
1.2
A
0.749204
AFFX-LysX-M_at
2.9
A
0.814869
AFFX-LysX-3_at
6.2
A
0.544587
AFFX-PheX-5_at
1.7
A
0.971543
AFFX-PheX-M_at
8.3
A
0.724854
AFFX-PheX-3_at
7.2
A
0.760937
AFFX-ThrX-5_at
17.1
A
0.559354
AFFX-ThrX-M_at
14
A
0.185131
Total number of rows:
22283
Table truncated, full table size
579 Kbytes
.
Supplementary data files not provided
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