GEO Publications
Handout
NAR 2024 (latest)
NAR 2002 (original)
All publications
FAQ
MIAME
Email GEO
NCBI
>
GEO
>
Accession Display
Not logged in |
Login
GEO help:
Mouse over screen elements for information.
Scope:
Self
Platform
Samples
Series
Family
Format:
HTML
SOFT
MINiML
Amount:
Brief
Quick
GEO accession:
Sample GSM94228
Query DataSets for GSM94228
Status
Public on Mar 16, 2006
Title
AMKL patient sample_AMKL033
Sample type
RNA
Source name
bone marrow or peripheral blood
Organism
Homo sapiens
Characteristics
diagnostic sample
Extracted molecule
total RNA
Extraction protocol
mononuclear cells after Ficol gradient, RNA extract with TRIZOL and promega SV column
Label
biotin
Label protocol
2-10 µg of total RNA was processed to produce biotinylated cRNA targets.
Hybridization protocol
standard Affymetrix procedures
Scan protocol
standard Affymetrix procedures
Description
AMKL diagnostic sample
Data processing
Affymetrix Microarray Suite version 5.0
Submission date
Jan 30, 2006
Last update date
Mar 16, 2006
Contact name
Jean-Pierre Bourquin
E-mail(s)
jean-pierre.bourquin@kispi.unizh.ch
Phone
+41 44 266 7304
Fax
+41 44 266 7171
Organization name
University Children's Hospital Zurich
Department
Pediatric Oncology
Lab
Molecular Oncology
Street address
Steinwiesstrasse 75
City
Zurich
ZIP/Postal code
8032
Country
Switzerland
Platform ID
GPL96
Series (1)
GSE4119
Expression profiling of acute megakaryoblastic leukemia
Data table header descriptions
ID_REF
VALUE
MAS5-calculated Signal intensity
ABS_CALL
the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE
'detection p-value', p-value that indicates the significance level of the detection call
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
AFFX-BioB-5_at
99.7
P
0.002275
AFFX-BioB-M_at
324
P
5.20E-05
AFFX-BioB-3_at
122.4
P
1.69E-04
AFFX-BioC-5_at
453.3
P
9.50E-05
AFFX-BioC-3_at
372.2
P
6.00E-05
AFFX-BioDn-5_at
356.5
P
5.20E-05
AFFX-BioDn-3_at
1949.1
P
6.00E-05
AFFX-CreX-5_at
4833.5
P
4.40E-05
AFFX-CreX-3_at
6302.8
P
4.40E-05
AFFX-DapX-5_at
1.9
A
0.470241
AFFX-DapX-M_at
13.9
A
0.262827
AFFX-DapX-3_at
2
A
0.883887
AFFX-LysX-5_at
1.1
A
0.860518
AFFX-LysX-M_at
7.6
A
0.659339
AFFX-LysX-3_at
1.2
A
0.672921
AFFX-PheX-5_at
1.8
A
0.897835
AFFX-PheX-M_at
10.2
A
0.574038
AFFX-PheX-3_at
15.8
A
0.455413
AFFX-ThrX-5_at
2.2
A
0.883887
AFFX-ThrX-M_at
7.6
A
0.574038
Total number of rows:
22283
Table truncated, full table size
580 Kbytes
.
Supplementary data files not provided
|
NLM
|
NIH
|
GEO Help
|
Disclaimer
|
Accessibility
|
