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GEO accession:
Sample GSM936090
Query DataSets for GSM936090
Status
Public on May 24, 2012
Title
Broad_Combined_HepG2
Sample type
SRA
Source name
HepG2
Organism
Homo sapiens
Characteristics
lab: Broad
lab description: Bernstein - Broad Institute
datatype: Combined
datatype description: Multi-assay Synthesis
cell: HepG2
cell organism: human
cell description: hepatocellular carcinoma
cell karyotype: cancer
cell lineage: endoderm
cell sex: M
softwareversion: ChromHMM_ENCODEDynamicsPaper
Biomaterial provider
ATCC
Growth protocol
HepG2_protocol.pdf
Extracted molecule
genomic DNA
Extraction protocol
Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeBroadHmm
Library strategy
ChIP-Seq
Library source
genomic
Library selection
ChIP
Instrument model
Illumina Genome Analyzer
Data processing
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeBroadHmm
Submission date
May 23, 2012
Last update date
May 15, 2019
Contact name
ENCODE DCC
E-mail(s)
encode-help@lists.stanford.edu
Organization name
ENCODE DCC
Street address
300 Pasteur Dr
City
Stanford
State/province
CA
ZIP/Postal code
94305-5120
Country
USA
Platform ID
GPL9052
Series (1)
GSE38163
Chromatin State Segmentation by HMM from ENCODE/Broad
Relations
Reanalysis of
GSM733638
Reanalysis of
GSM733641
Reanalysis of
GSM733645
Reanalysis of
GSM733685
Reanalysis of
GSM733693
Reanalysis of
GSM733694
Reanalysis of
GSM733732
Reanalysis of
GSM733737
Reanalysis of
GSM733743
Reanalysis of
GSM733754
Reanalysis of
GSM733774
Reanalysis of
GSM798321
BioSample
SAMN02197542
Named Annotation
GSM936090_hg19_wgEncodeBroadHmmHepg2HMM.bed.gz
SRA
SRX067389
SRA
SRX067392
SRA
SRX067396
SRA
SRX067436
SRA
SRX067444
SRA
SRX067445
SRA
SRX067483
SRA
SRX067488
SRA
SRX067494
SRA
SRX067505
SRA
SRX067525
SRA
SRX099898
Supplementary file
Size
Download
File type/resource
GSM936090_hg19_wgEncodeBroadHmmHepg2HMM.bed.gz
5.1 Mb
(ftp)
(http)
BED
SRA Run Selector
Raw data are available in SRA
Processed data provided as supplementary file
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