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GEO accession:
Sample GSM936086
Query DataSets for GSM936086
Status
Public on May 24, 2012
Title
Broad_Combined_NHLF
Sample type
SRA
Source name
NHLF
Organism
Homo sapiens
Characteristics
lab: Broad
lab description: Bernstein - Broad Institute
datatype: Combined
datatype description: Multi-assay Synthesis
cell: NHLF
cell organism: human
cell description: lung fibroblasts
cell karyotype: normal
cell lineage: endoderm
cell sex: U
softwareversion: ChromHMM_ENCODEDynamicPaper
Biomaterial provider
Lonza
Growth protocol
NHLF_Bernstein_protocol.pdf
Extracted molecule
genomic DNA
Extraction protocol
Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeBroadHmm
Library strategy
ChIP-Seq
Library source
genomic
Library selection
ChIP
Instrument model
Illumina Genome Analyzer
Data processing
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeBroadHmm
Submission date
May 23, 2012
Last update date
May 15, 2019
Contact name
ENCODE DCC
E-mail(s)
encode-help@lists.stanford.edu
Organization name
ENCODE DCC
Street address
300 Pasteur Dr
City
Stanford
State/province
CA
ZIP/Postal code
94305-5120
Country
USA
Platform ID
GPL9052
Series (1)
GSE38163
Chromatin State Segmentation by HMM from ENCODE/Broad
Relations
Reanalysis of
GSM733646
Reanalysis of
GSM733649
Reanalysis of
GSM733652
Reanalysis of
GSM733695
Reanalysis of
GSM733699
Reanalysis of
GSM733706
Reanalysis of
GSM733723
Reanalysis of
GSM733731
Reanalysis of
GSM733764
Reanalysis of
GSM733781
BioSample
SAMN02197538
Named Annotation
GSM936086_hg19_wgEncodeBroadHmmNhlfHMM.bed.gz
SRA
SRX067397
SRA
SRX067400
SRA
SRX067403
SRA
SRX067446
SRA
SRX067450
SRA
SRX067457
SRA
SRX067474
SRA
SRX067482
SRA
SRX067515
SRA
SRX067532
Supplementary file
Size
Download
File type/resource
GSM936086_hg19_wgEncodeBroadHmmNhlfHMM.bed.gz
5.9 Mb
(ftp)
(http)
BED
SRA Run Selector
Raw data are available in SRA
Processed data provided as supplementary file
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