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GEO accession:
Sample GSM936084
Query DataSets for GSM936084
Status
Public on May 24, 2012
Title
Broad_Combined_HMEC
Sample type
SRA
Source name
HMEC
Organism
Homo sapiens
Characteristics
lab: Broad
lab description: Bernstein - Broad Institute
datatype: Combined
datatype description: Multi-assay Synthesis
cell: HMEC
cell organism: human
cell description: mammary epithelial cells
cell karyotype: normal
cell lineage: ectoderm
cell sex: U
softwareversion: ChromHMM_ENCODEDynamicsPaper
Biomaterial provider
Lonza
Growth protocol
HMEC_Bernstein_protocol.pdf
Extracted molecule
genomic DNA
Extraction protocol
Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeBroadHmm
Library strategy
ChIP-Seq
Library source
genomic
Library selection
ChIP
Instrument model
Illumina Genome Analyzer
Data processing
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeBroadHmm
Submission date
May 23, 2012
Last update date
May 15, 2019
Contact name
ENCODE DCC
E-mail(s)
encode-help@lists.stanford.edu
Organization name
ENCODE DCC
Street address
300 Pasteur Dr
City
Stanford
State/province
CA
ZIP/Postal code
94305-5120
Country
USA
Platform ID
GPL9052
Series (1)
GSE38163
Chromatin State Segmentation by HMM from ENCODE/Broad
Relations
Reanalysis of
GSM733647
Reanalysis of
GSM733654
Reanalysis of
GSM733660
Reanalysis of
GSM733668
Reanalysis of
GSM733705
Reanalysis of
GSM733707
Reanalysis of
GSM733712
Reanalysis of
GSM733713
Reanalysis of
GSM733722
Reanalysis of
GSM733724
BioSample
SAMN02197569
Named Annotation
GSM936084_hg19_wgEncodeBroadHmmHmecHMM.bed.gz
SRA
SRX067398
SRA
SRX067405
SRA
SRX067411
SRA
SRX067419
SRA
SRX067456
SRA
SRX067458
SRA
SRX067463
SRA
SRX067464
SRA
SRX067473
SRA
SRX067475
Supplementary file
Size
Download
File type/resource
GSM936084_hg19_wgEncodeBroadHmmHmecHMM.bed.gz
5.6 Mb
(ftp)
(http)
BED
SRA Run Selector
Raw data are available in SRA
Processed data provided as supplementary file
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