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Sample GSM935617 Query DataSets for GSM935617
Status Public on May 22, 2012
Title USC_ChipSeq_PANC-1_Input_UCDavis (superseded by GSE86663)
Sample type SRA
Source name PANC-1
Organism Homo sapiens
Characteristics biomaterial_type: immortalized cell line
lab: USC
lab description: Farnham - University of Southern California
datatype: ChipSeq
datatype description: Chromatin IP Sequencing
line: PANC-1
cell organism: human
cell description: pancreatic carcinoma, (PMID: 1140870) PANC-1 was established from a pancreatic carcinoma, which was extracted via pancreatico-duodenectomy specimen from a 56-year-old Caucasian individual. Malignancy of this cell line was verified via in vitro and in vivo assays.
cell karyotype: cancer
cell lineage: endoderm
cell sex: M
treatment: None
treatment description: No special treatment or protocol applies
antibody: Input
antibody description: Control signal which may be subtracted from experimental raw signal before peaks are called.
control: UCDavis
control description: Input library was prepared at UC Davis.
control: UCDavis
control description: Input library was prepared at UC Davis.
controlid: wgEncodeEH002070
replicate: 1
Biomaterial provider ATCC
Treatment protocol None
Extracted molecule genomic DNA
Extraction protocol Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina Genome Analyzer
Description ****************************
GSM935617 record metadata submitted on May 22 2012 may be obsolete, up to date experimental metadata was resubmitted by ENCODE DCC and is available at GSE86663
Data processing
Submission date May 22, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL9052
Series (1)
GSE31477 ENCODE Transcription Factor Binding Sites by ChIP-seq from Stanford/Yale/USC/Harvard
Superseded by GSE86663
SRA SRX150696
BioSample SAMN01001156
Named Annotation GSM935617_hg19_wgEncodeSydhTfbsPanc1InputUcdSig.bigWig

Supplementary file Size Download File type/resource
GSM935617_hg19_wgEncodeSydhTfbsPanc1InputUcdSig.bigWig 280.8 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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