|
| Status |
Public on May 22, 2012 |
| Title |
USC_ChipSeq_PANC-1_Input_UCDavis (superseded by GSE86663) |
| Sample type |
SRA |
| |
|
| Source name |
PANC-1
|
| Organism |
Homo sapiens |
| Characteristics |
biomaterial_type: immortalized cell line
lab: USC
lab description: Farnham - University of Southern California
datatype: ChipSeq
datatype description: Chromatin IP Sequencing
line: PANC-1
cell organism: human
cell description: pancreatic carcinoma, (PMID: 1140870) PANC-1 was established from a pancreatic carcinoma, which was extracted via pancreatico-duodenectomy specimen from a 56-year-old Caucasian individual. Malignancy of this cell line was verified via in vitro and in vivo assays.
cell karyotype: cancer
cell lineage: endoderm
cell sex: M
treatment: None
treatment description: No special treatment or protocol applies
antibody: Input
antibody description: Control signal which may be subtracted from experimental raw signal before peaks are called.
control: UCDavis
control description: Input library was prepared at UC Davis.
control: UCDavis
control description: Input library was prepared at UC Davis.
controlid: wgEncodeEH002070
replicate: 1
|
| Biomaterial provider |
ATCC
|
| Treatment protocol |
None
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeSydhTfbs
|
| |
|
| Library strategy |
ChIP-Seq |
| Library source |
genomic |
| Library selection |
ChIP |
| Instrument model |
Illumina Genome Analyzer |
| |
|
| Description |
****************************
GSM935617 record metadata submitted on May 22 2012 may be obsolete, up to date experimental metadata was resubmitted by ENCODE DCC and is available at GSE86663
****************************
|
| Data processing |
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeSydhTfbs
|
| |
|
| Submission date |
May 22, 2012 |
| Last update date |
May 15, 2019 |
| Contact name |
ENCODE DCC |
| E-mail(s) |
encode-help@lists.stanford.edu
|
| Organization name |
ENCODE DCC
|
| Street address |
300 Pasteur Dr
|
| City |
Stanford |
| State/province |
CA |
| ZIP/Postal code |
94305-5120 |
| Country |
USA |
| |
|
| Platform ID |
GPL9052 |
| Series (1) |
| GSE31477 |
ENCODE Transcription Factor Binding Sites by ChIP-seq from Stanford/Yale/USC/Harvard |
|
| Relations |
| Superseded by |
GSE86663 |
| SRA |
SRX150696 |
| BioSample |
SAMN01001156 |
| Named Annotation |
GSM935617_hg19_wgEncodeSydhTfbsPanc1InputUcdSig.bigWig |
