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Sample GSM935559 Query DataSets for GSM935559
Status Public on May 22, 2012
Title Stanford_ChipSeq_GM12878_p300_(SC-584)_IgG-mus
Sample type SRA
 
Source name GM12878
Organism Homo sapiens
Characteristics lab: Stanford
lab description: Snyder - Stanford University
datatype: ChipSeq
datatype description: Chromatin IP Sequencing
cell: GM12878
cell organism: human
cell description: B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus
cell karyotype: normal
cell lineage: mesoderm
cell sex: F
treatment: None
treatment description: No special treatment or protocol applies
antibody: p300_(SC-584)
antibody antibodydescription: Rabbit polyclonal IgG, epitope mapping at the N-terminus of p300 of human origin. Antibody Target: P300
antibody targetdescription: Encodes the adenovirus E1A-associated cellular p300 transcriptional co-activator protein. Functions as histone acetyltransferase and regulates transcription via chromatin remodeling. Acetylates all four core histones in nucleosomes. Mediates cAMP-gene regulation by binding specifically to phosphorylated CREB protein
antibody vendorname: Santa Cruz Biotech
antibody vendorid: sc-584
control: IgG-mus
control description: Input signal from Normal Mouse IgG ChIP-seq.
control: IgG-mus
control description: Input signal from Normal Mouse IgG ChIP-seq.
controlid: wgEncodeEH000706
replicate: 1
Biomaterial provider Coriell; http://ccr.coriell.org/Sections/Search/Search.aspx?PgId=165&q=GM12878
Treatment protocol None
Growth protocol GM12878_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeSydhTfbs
 
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina Genome Analyzer
 
Data processing http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeSydhTfbs
 
Submission date May 22, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL9052
Series (2)
GSE31477 ENCODE Transcription Factor Binding Sites by ChIP-seq from Stanford/Yale/USC/Harvard
GSE51334 DNA replication-timing boundaries separate stable chromosome domains with cell-type-specific functions
Relations
SRA SRX150638
BioSample SAMN01001098
Named Annotation GSM935559_hg19_wgEncodeSydhTfbsGm12878P300sc584IggmusSig.bigWig

Supplementary file Size Download File type/resource
GSM935559_hg19_wgEncodeSydhTfbsGm12878P300sc584IggmusPk.narrowPeak.gz 626.5 Kb (ftp)(http) NARROWPEAK
GSM935559_hg19_wgEncodeSydhTfbsGm12878P300sc584IggmusSig.bigWig 242.5 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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