|
Status |
Public on May 22, 2012 |
Title |
Stanford_ChipSeq_HepG2_p300_(SC-584)_IgG-rab |
Sample type |
SRA |
|
|
Source name |
HepG2
|
Organism |
Homo sapiens |
Characteristics |
lab: Stanford lab description: Snyder - Stanford University datatype: ChipSeq datatype description: Chromatin IP Sequencing cell: HepG2 cell organism: human cell description: hepatocellular carcinoma cell karyotype: cancer cell lineage: endoderm cell sex: M treatment: None treatment description: No special treatment or protocol applies antibody: p300_(SC-584) antibody antibodydescription: Rabbit polyclonal IgG, epitope mapping at the N-terminus of p300 of human origin. Antibody Target: P300 antibody targetdescription: Encodes the adenovirus E1A-associated cellular p300 transcriptional co-activator protein. Functions as histone acetyltransferase and regulates transcription via chromatin remodeling. Acetylates all four core histones in nucleosomes. Mediates cAMP-gene regulation by binding specifically to phosphorylated CREB protein antibody vendorname: Santa Cruz Biotech antibody vendorid: sc-584 control: IgG-rab control description: Input signal from Normal Rabbit IgG ChIP-seq. control: IgG-rab control description: Input signal from Normal Rabbit IgG ChIP-seq. controlid: wgEncodeEH001791 replicate: 1
|
Biomaterial provider |
ATCC
|
Treatment protocol |
None
|
Growth protocol |
HepG2_protocol.pdf
|
Extracted molecule |
genomic DNA |
Extraction protocol |
Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeSydhTfbs
|
|
|
Library strategy |
ChIP-Seq |
Library source |
genomic |
Library selection |
ChIP |
Instrument model |
Illumina Genome Analyzer |
|
|
Data processing |
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeSydhTfbs
|
|
|
Submission date |
May 22, 2012 |
Last update date |
May 15, 2019 |
Contact name |
ENCODE DCC |
E-mail(s) |
encode-help@lists.stanford.edu
|
Organization name |
ENCODE DCC
|
Street address |
300 Pasteur Dr
|
City |
Stanford |
State/province |
CA |
ZIP/Postal code |
94305-5120 |
Country |
USA |
|
|
Platform ID |
GPL9052 |
Series (2) |
GSE31477 |
ENCODE Transcription Factor Binding Sites by ChIP-seq from Stanford/Yale/USC/Harvard |
GSE51334 |
DNA replication-timing boundaries separate stable chromosome domains with cell-type-specific functions |
|
Relations |
SRA |
SRX150624 |
BioSample |
SAMN01001084 |
Named Annotation |
GSM935545_hg19_wgEncodeSydhTfbsHepg2P300sc582IggrabSig.bigWig |