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Sample GSM935545 Query DataSets for GSM935545
Status Public on May 22, 2012
Title Stanford_ChipSeq_HepG2_p300_(SC-584)_IgG-rab
Sample type SRA
 
Source name HepG2
Organism Homo sapiens
Characteristics lab: Stanford
lab description: Snyder - Stanford University
datatype: ChipSeq
datatype description: Chromatin IP Sequencing
cell: HepG2
cell organism: human
cell description: hepatocellular carcinoma
cell karyotype: cancer
cell lineage: endoderm
cell sex: M
treatment: None
treatment description: No special treatment or protocol applies
antibody: p300_(SC-584)
antibody antibodydescription: Rabbit polyclonal IgG, epitope mapping at the N-terminus of p300 of human origin. Antibody Target: P300
antibody targetdescription: Encodes the adenovirus E1A-associated cellular p300 transcriptional co-activator protein. Functions as histone acetyltransferase and regulates transcription via chromatin remodeling. Acetylates all four core histones in nucleosomes. Mediates cAMP-gene regulation by binding specifically to phosphorylated CREB protein
antibody vendorname: Santa Cruz Biotech
antibody vendorid: sc-584
control: IgG-rab
control description: Input signal from Normal Rabbit IgG ChIP-seq.
control: IgG-rab
control description: Input signal from Normal Rabbit IgG ChIP-seq.
controlid: wgEncodeEH001791
replicate: 1
Biomaterial provider ATCC
Treatment protocol None
Growth protocol HepG2_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeSydhTfbs
 
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina Genome Analyzer
 
Data processing http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeSydhTfbs
 
Submission date May 22, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL9052
Series (2)
GSE31477 ENCODE Transcription Factor Binding Sites by ChIP-seq from Stanford/Yale/USC/Harvard
GSE51334 DNA replication-timing boundaries separate stable chromosome domains with cell-type-specific functions
Relations
SRA SRX150624
BioSample SAMN01001084
Named Annotation GSM935545_hg19_wgEncodeSydhTfbsHepg2P300sc582IggrabSig.bigWig

Supplementary file Size Download File type/resource
GSM935545_hg19_wgEncodeSydhTfbsHepg2P300sc582IggrabPk.narrowPeak.gz 638.9 Kb (ftp)(http) NARROWPEAK
GSM935545_hg19_wgEncodeSydhTfbsHepg2P300sc582IggrabSig.bigWig 338.1 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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