|
Status |
Public on May 22, 2012 |
Title |
Stanford_ChipSeq_GM12878_Input_IgG-mus |
Sample type |
SRA |
|
|
Source name |
GM12878
|
Organism |
Homo sapiens |
Characteristics |
lab: Stanford lab description: Snyder - Stanford University datatype: ChipSeq datatype description: Chromatin IP Sequencing cell: GM12878 cell organism: human cell description: B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus cell karyotype: normal cell lineage: mesoderm cell sex: F treatment: None treatment description: No special treatment or protocol applies antibody: Input antibody description: Control signal which may be subtracted from experimental raw signal before peaks are called. control: IgG-mus control description: Input signal from Normal Mouse IgG ChIP-seq. control: IgG-mus control description: Input signal from Normal Mouse IgG ChIP-seq. controlid: wgEncodeEH000706 labversion: Illumina 2.0, low confidence sequences excluded replicate: 1
|
Biomaterial provider |
Coriell
|
Treatment protocol |
None
|
Growth protocol |
GM12878_protocol.pdf
|
Extracted molecule |
genomic DNA |
Extraction protocol |
Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeSydhTfbs
|
|
|
Library strategy |
ChIP-Seq |
Library source |
genomic |
Library selection |
ChIP |
Instrument model |
Illumina Genome Analyzer |
|
|
Data processing |
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeSydhTfbs
|
|
|
Submission date |
May 22, 2012 |
Last update date |
May 15, 2019 |
Contact name |
ENCODE DCC |
E-mail(s) |
encode-help@lists.stanford.edu
|
Organization name |
ENCODE DCC
|
Street address |
300 Pasteur Dr
|
City |
Stanford |
State/province |
CA |
ZIP/Postal code |
94305-5120 |
Country |
USA |
|
|
Platform ID |
GPL9052 |
Series (1) |
GSE31477 |
ENCODE Transcription Factor Binding Sites by ChIP-seq from Stanford/Yale/USC/Harvard |
|
Relations |
SRA |
SRX150470 |
BioSample |
SAMN01000930 |
Named Annotation |
GSM935390_hg19_wgEncodeSydhTfbsGm12878InputIggmusSig.bigWig |