|
| Status |
Public on May 10, 2013 |
| Title |
Non-smoker female, NSCLC, smRNA-Seq [P1N] |
| Sample type |
SRA |
| |
|
| Source name |
Non-smoker female, NSCLC
|
| Organism |
Homo sapiens |
| Characteristics |
disease: Adenocarcinoma, NSCLC
patient: 1
tissue type: normal
Stage: IB
gender: female
age: 44 years
smoker: non-smoker
|
| Treatment protocol |
Qiagen miRNeasy kit (Cat. 217004)
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Purified total RNA was processed by illumina small RNA sample preparation kit. Before sequencing, small RNA library, from 22nt and 30nt small RNA fragment, was selected from PAGE gel. Sequencing was performed at Illumina Genome Analyzer IIx, 36bp single read sequencing.
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
size fractionation |
| Instrument model |
Illumina Genome Analyzer IIx |
| |
|
| Description |
44 years; female; a non-smoker
|
| Data processing |
Basecalls performed using Illumina Genome AnalyzerIIx
Mapped to hg19 whole genome using bowtie v0.12.7 with parameters -a -v 0
Expression level is calculated by counting reads
Supplementary_files_format_and_content: text
|
| |
|
| Submission date |
May 04, 2012 |
| Last update date |
May 15, 2019 |
| Contact name |
Sanghyuk Lee |
| E-mail(s) |
sanghyuk@ewha.ac.kr
|
| Phone |
+82-42-879-8511
|
| Fax |
+82-42-879-8519
|
| URL |
http://www.kobic.re.kr
|
| Organization name |
KRIBB
|
| Department |
KOBIC
|
| Street address |
125 Gwahak-ro
|
| City |
Daejeon |
| ZIP/Postal code |
305-806 |
| Country |
South Korea |
| |
|
| Platform ID |
GPL10999 |
| Series (2) |
| GSE37764 |
A high dimensional deep sequencing study of non-small cell lung adenocarcinoma in never-smoker Korean females [Seq] |
| GSE37765 |
A high dimensional deep sequencing study of non-small cell lung adenocarcinoma in never-smoker Korean females |
|
| Relations |
| SRA |
SRX145888 |
| BioSample |
SAMN00990841 |
