NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM923453 Query DataSets for GSM923453
Status Public on Apr 27, 2012
Title UW_RepliSeq_BG02ES
Sample type SRA
 
Source name BG02ES
Organism Homo sapiens
Characteristics lab: UW
lab description: Stamatoyannopoulous - University of Washington
datatype: RepliSeq
datatype description: Assessment of DNA Replication Timing
cell: BG02ES
cell organism: human
cell description: embryonic stem cell (hESC), BG02, treatment: H9 conditioned medium
cell karyotype: normal
cell lineage: inner cell mass
cell sex: M
labexpid: DS9027
phase: G1b
phase description: Flow sorted, G1b phase corresponds to the second half of the first DNA content window
replicate: 1
Biomaterial provider BresaGen, Inc.
Extracted molecule genomic DNA
Extraction protocol http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeUwRepliSeq
 
Library strategy OTHER
Library source genomic
Library selection other
Instrument model Illumina Genome Analyzer II
 
Data processing http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeUwRepliSeq
 
Submission date Apr 27, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL9115
Series (2)
GSE34399 Replication Timing by Repli-seq from ENCODE/University of Washington
GSE51334 DNA replication-timing boundaries separate stable chromosome domains with cell-type-specific functions
Relations
Reanalyzed by GSE53984
SRA SRX144824
BioSample SAMN00990243
Named Annotation GSM923453_hg19_wgEncodeUwRepliSeqBg02esG1bPctSignalRep1.bigWig
Named Annotation GSM923453_hg19_wgEncodeUwRepliSeqBg02esG2PctSignalRep1.bigWig
Named Annotation GSM923453_hg19_wgEncodeUwRepliSeqBg02esS1PctSignalRep1.bigWig
Named Annotation GSM923453_hg19_wgEncodeUwRepliSeqBg02esS2PctSignalRep1.bigWig
Named Annotation GSM923453_hg19_wgEncodeUwRepliSeqBg02esS3PctSignalRep1.bigWig
Named Annotation GSM923453_hg19_wgEncodeUwRepliSeqBg02esS4PctSignalRep1.bigWig
Named Annotation GSM923453_hg19_wgEncodeUwRepliSeqBg02esSumSignalRep1.bigWig
Named Annotation GSM923453_hg19_wgEncodeUwRepliSeqBg02esWaveSignalRep1.bigWig

Supplementary file Size Download File type/resource
GSM923453_hg19_wgEncodeUwRepliSeqBg02esG1bPctSignalRep1.bigWig 8.4 Mb (ftp)(http) BIGWIG
GSM923453_hg19_wgEncodeUwRepliSeqBg02esG2PctSignalRep1.bigWig 8.7 Mb (ftp)(http) BIGWIG
GSM923453_hg19_wgEncodeUwRepliSeqBg02esPkRep1.bed.gz 40.2 Kb (ftp)(http) BED
GSM923453_hg19_wgEncodeUwRepliSeqBg02esS1PctSignalRep1.bigWig 8.4 Mb (ftp)(http) BIGWIG
GSM923453_hg19_wgEncodeUwRepliSeqBg02esS2PctSignalRep1.bigWig 8.5 Mb (ftp)(http) BIGWIG
GSM923453_hg19_wgEncodeUwRepliSeqBg02esS3PctSignalRep1.bigWig 8.6 Mb (ftp)(http) BIGWIG
GSM923453_hg19_wgEncodeUwRepliSeqBg02esS4PctSignalRep1.bigWig 8.6 Mb (ftp)(http) BIGWIG
GSM923453_hg19_wgEncodeUwRepliSeqBg02esSumSignalRep1.bigWig 12.6 Mb (ftp)(http) BIGWIG
GSM923453_hg19_wgEncodeUwRepliSeqBg02esValleysRep1.bed.gz 40.1 Kb (ftp)(http) BED
GSM923453_hg19_wgEncodeUwRepliSeqBg02esWaveSignalRep1.bigWig 9.8 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap