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Sample GSM923447 Query DataSets for GSM923447
Status Public on Apr 27, 2012
Title UW_RepliSeq_IMR90
Sample type SRA
 
Source name IMR90
Organism Homo sapiens
Characteristics lab: UW
lab description: Stamatoyannopoulous - University of Washington
datatype: RepliSeq
datatype description: Assessment of DNA Replication Timing
cell: IMR90
cell organism: human
cell description: fetal lung fibroblasts, newly promoted to tier 2: not in 2011 analysis
cell karyotype: normal
cell lineage: endoderm
cell sex: F
labexpid: DS17625
phase: G1b
phase description: Flow sorted, G1b phase corresponds to the second half of the first DNA content window
replicate: 1
Biomaterial provider ATCC
Growth protocol IMR90_Stam_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeUwRepliSeq
 
Library strategy OTHER
Library source genomic
Library selection other
Instrument model Illumina Genome Analyzer II
 
Data processing http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeUwRepliSeq
 
Submission date Apr 27, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL9115
Series (2)
GSE34399 Replication Timing by Repli-seq from ENCODE/University of Washington
GSE51334 DNA replication-timing boundaries separate stable chromosome domains with cell-type-specific functions
Relations
Reanalyzed by GSE53984
SRA SRX144818
BioSample SAMN00990237
Named Annotation GSM923447_hg19_wgEncodeUwRepliSeqImr90G1bPctSignalRep1.bigWig
Named Annotation GSM923447_hg19_wgEncodeUwRepliSeqImr90G2PctSignalRep1.bigWig
Named Annotation GSM923447_hg19_wgEncodeUwRepliSeqImr90S1PctSignalRep1.bigWig
Named Annotation GSM923447_hg19_wgEncodeUwRepliSeqImr90S2PctSignalRep1.bigWig
Named Annotation GSM923447_hg19_wgEncodeUwRepliSeqImr90S3PctSignalRep1.bigWig
Named Annotation GSM923447_hg19_wgEncodeUwRepliSeqImr90S4PctSignalRep1.bigWig
Named Annotation GSM923447_hg19_wgEncodeUwRepliSeqImr90SumSignalRep1.bigWig
Named Annotation GSM923447_hg19_wgEncodeUwRepliSeqImr90WaveSignalRep1.bigWig

Supplementary file Size Download File type/resource
GSM923447_hg19_wgEncodeUwRepliSeqImr90G1bPctSignalRep1.bigWig 8.1 Mb (ftp)(http) BIGWIG
GSM923447_hg19_wgEncodeUwRepliSeqImr90G2PctSignalRep1.bigWig 8.0 Mb (ftp)(http) BIGWIG
GSM923447_hg19_wgEncodeUwRepliSeqImr90PkRep1.bed.gz 31.9 Kb (ftp)(http) BED
GSM923447_hg19_wgEncodeUwRepliSeqImr90S1PctSignalRep1.bigWig 7.4 Mb (ftp)(http) BIGWIG
GSM923447_hg19_wgEncodeUwRepliSeqImr90S2PctSignalRep1.bigWig 7.9 Mb (ftp)(http) BIGWIG
GSM923447_hg19_wgEncodeUwRepliSeqImr90S3PctSignalRep1.bigWig 8.0 Mb (ftp)(http) BIGWIG
GSM923447_hg19_wgEncodeUwRepliSeqImr90S4PctSignalRep1.bigWig 7.8 Mb (ftp)(http) BIGWIG
GSM923447_hg19_wgEncodeUwRepliSeqImr90SumSignalRep1.bigWig 12.3 Mb (ftp)(http) BIGWIG
GSM923447_hg19_wgEncodeUwRepliSeqImr90ValleysRep1.bed.gz 31.7 Kb (ftp)(http) BED
GSM923447_hg19_wgEncodeUwRepliSeqImr90WaveSignalRep1.bigWig 9.8 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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