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Sample GSM923444 Query DataSets for GSM923444
Status Public on Apr 27, 2012
Title UW_RepliSeq_BJ
Sample type SRA
 
Source name BJ
Organism Homo sapiens
Characteristics lab: UW
lab description: Stamatoyannopoulous - University of Washington
datatype: RepliSeq
datatype description: Assessment of DNA Replication Timing
cell: BJ
cell organism: human
cell description: skin fibroblast, "The line was established from skin taken from normal foreskin." - ATCC. (PMID: 9916803)
cell karyotype: normal
cell sex: M
labexpid: DS9021
phase: G1b
phase description: Flow sorted, G1b phase corresponds to the second half of the first DNA content window
replicate: 1
Biomaterial provider ATCC
Growth protocol BJ_Stam_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeUwRepliSeq
 
Library strategy OTHER
Library source genomic
Library selection other
Instrument model Illumina Genome Analyzer II
 
Data processing http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeUwRepliSeq
 
Submission date Apr 27, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL9115
Series (2)
GSE34399 Replication Timing by Repli-seq from ENCODE/University of Washington
GSE51334 DNA replication-timing boundaries separate stable chromosome domains with cell-type-specific functions
Relations
Reanalyzed by GSE53984
SRA SRX144815
BioSample SAMN00990234
Named Annotation GSM923444_hg19_wgEncodeUwRepliSeqBjG1bPctSignalRep1.bigWig
Named Annotation GSM923444_hg19_wgEncodeUwRepliSeqBjG1bPctSignalRep2.bigWig
Named Annotation GSM923444_hg19_wgEncodeUwRepliSeqBjG2PctSignalRep1.bigWig
Named Annotation GSM923444_hg19_wgEncodeUwRepliSeqBjG2PctSignalRep2.bigWig
Named Annotation GSM923444_hg19_wgEncodeUwRepliSeqBjS1PctSignalRep1.bigWig
Named Annotation GSM923444_hg19_wgEncodeUwRepliSeqBjS1PctSignalRep2.bigWig
Named Annotation GSM923444_hg19_wgEncodeUwRepliSeqBjS2PctSignalRep1.bigWig
Named Annotation GSM923444_hg19_wgEncodeUwRepliSeqBjS2PctSignalRep2.bigWig
Named Annotation GSM923444_hg19_wgEncodeUwRepliSeqBjS3PctSignalRep1.bigWig
Named Annotation GSM923444_hg19_wgEncodeUwRepliSeqBjS3PctSignalRep2.bigWig
Named Annotation GSM923444_hg19_wgEncodeUwRepliSeqBjS4PctSignalRep1.bigWig
Named Annotation GSM923444_hg19_wgEncodeUwRepliSeqBjS4PctSignalRep2.bigWig
Named Annotation GSM923444_hg19_wgEncodeUwRepliSeqBjSumSignalRep1.bigWig
Named Annotation GSM923444_hg19_wgEncodeUwRepliSeqBjSumSignalRep2.bigWig
Named Annotation GSM923444_hg19_wgEncodeUwRepliSeqBjWaveSignalRep1.bigWig
Named Annotation GSM923444_hg19_wgEncodeUwRepliSeqBjWaveSignalRep2.bigWig

Supplementary file Size Download File type/resource
GSM923444_hg19_wgEncodeUwRepliSeqBjG1bPctSignalRep1.bigWig 8.6 Mb (ftp)(http) BIGWIG
GSM923444_hg19_wgEncodeUwRepliSeqBjG1bPctSignalRep2.bigWig 8.0 Mb (ftp)(http) BIGWIG
GSM923444_hg19_wgEncodeUwRepliSeqBjG2PctSignalRep1.bigWig 8.5 Mb (ftp)(http) BIGWIG
GSM923444_hg19_wgEncodeUwRepliSeqBjG2PctSignalRep2.bigWig 8.3 Mb (ftp)(http) BIGWIG
GSM923444_hg19_wgEncodeUwRepliSeqBjPkRep1.bed.gz 40.9 Kb (ftp)(http) BED
GSM923444_hg19_wgEncodeUwRepliSeqBjPkRep2.bed.gz 37.2 Kb (ftp)(http) BED
GSM923444_hg19_wgEncodeUwRepliSeqBjS1PctSignalRep1.bigWig 8.3 Mb (ftp)(http) BIGWIG
GSM923444_hg19_wgEncodeUwRepliSeqBjS1PctSignalRep2.bigWig 7.9 Mb (ftp)(http) BIGWIG
GSM923444_hg19_wgEncodeUwRepliSeqBjS2PctSignalRep1.bigWig 8.3 Mb (ftp)(http) BIGWIG
GSM923444_hg19_wgEncodeUwRepliSeqBjS2PctSignalRep2.bigWig 8.1 Mb (ftp)(http) BIGWIG
GSM923444_hg19_wgEncodeUwRepliSeqBjS3PctSignalRep1.bigWig 8.4 Mb (ftp)(http) BIGWIG
GSM923444_hg19_wgEncodeUwRepliSeqBjS3PctSignalRep2.bigWig 8.4 Mb (ftp)(http) BIGWIG
GSM923444_hg19_wgEncodeUwRepliSeqBjS4PctSignalRep1.bigWig 8.5 Mb (ftp)(http) BIGWIG
GSM923444_hg19_wgEncodeUwRepliSeqBjS4PctSignalRep2.bigWig 8.4 Mb (ftp)(http) BIGWIG
GSM923444_hg19_wgEncodeUwRepliSeqBjSumSignalRep1.bigWig 12.5 Mb (ftp)(http) BIGWIG
GSM923444_hg19_wgEncodeUwRepliSeqBjSumSignalRep2.bigWig 12.5 Mb (ftp)(http) BIGWIG
GSM923444_hg19_wgEncodeUwRepliSeqBjValleysRep1.bed.gz 40.9 Kb (ftp)(http) BED
GSM923444_hg19_wgEncodeUwRepliSeqBjValleysRep2.bed.gz 37.4 Kb (ftp)(http) BED
GSM923444_hg19_wgEncodeUwRepliSeqBjWaveSignalRep1.bigWig 9.7 Mb (ftp)(http) BIGWIG
GSM923444_hg19_wgEncodeUwRepliSeqBjWaveSignalRep2.bigWig 9.7 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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