|
Status |
Public on Jun 21, 2012 |
Title |
RCC without recurrence 42T2Y_s5_CACACC |
Sample type |
SRA |
|
|
Source name |
renal
|
Organism |
Homo sapiens |
Characteristics |
tumor group: RCC without recurrence tissue: clear cell renal cell carcinoma disease state: clear cell renal cell carcinoma without recurrence
|
Extracted molecule |
total RNA |
Extraction protocol |
Modifier Solid SREK protocol to run on the Illumina Flowcells. Previously published by Buermans et al, BMC Genomics. 2010 Dec 20;11:716.
|
|
|
Library strategy |
RNA-Seq |
Library source |
transcriptomic |
Library selection |
size fractionation |
Instrument model |
Illumina Genome Analyzer IIx |
|
|
Data processing |
truncate the sequence reads on the 3'adapter sequence: CGCCTTGG calculate the frequency of the unique sequences after truncation Genome_build: Hg19 Supplementary_files_format_and_content: Tab delimited: sequence <tab> frequency
|
|
|
Submission date |
Apr 26, 2012 |
Last update date |
May 15, 2019 |
Contact name |
Henk Buermans |
E-mail(s) |
h.buermans@lumc.nl
|
Phone |
+31715268558
|
Organization name |
Leiden University Medical Center
|
Department |
Human Genetics
|
Lab |
Leiden Genome Technology Center
|
Street address |
Albinusdreef 2
|
City |
Leiden |
State/province |
ZH |
ZIP/Postal code |
2300 RC |
Country |
Netherlands |
|
|
Platform ID |
GPL10999 |
Series (1) |
GSE37616 |
Genome-wide microRNA expression analysis of clear cell Renal Cell Carcinoma by next generation deep sequencing |
|
Relations |
SRA |
SRX144706 |
BioSample |
SAMN00989375 |