|
Status |
Public on Apr 19, 2012 |
Title |
LICR_ChipSeq_MEF_Input_adult-8wks |
Sample type |
SRA |
|
|
Source name |
MEF
|
Organism |
Mus musculus |
Characteristics |
lab: LICR-m lab description: Ren - Ludwig Institue for Cancer Research datatype: ChipSeq datatype description: Chromatin IP Sequencing cell: MEF cell organism: mouse cell description: Mouse Embryonic Fibroblast cell sex: M antibody: Input antibody description: Control signal which may be subtracted from experimental raw signal before peaks are called. age: adult-8wks age description: Adult 8 weeks age: adult-8wks age description: Adult 8 weeks control: std control description: Standard input signal for most experiments. controlid: wgEncodeEM001456 labversion: 03/09/10 Lane 4 replicate: 1 softwareversion: ELAND strain: C57BL/6 strain description: C57 black 6, the most common inbred strain of laboratory mouse
|
Biomaterial provider |
LICR lab
|
Growth protocol |
MEF_Ren_protocol.pdf
|
Extracted molecule |
genomic DNA |
Extraction protocol |
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=mm9&g=wgEncodeLicrTfbs
|
|
|
Library strategy |
ChIP-Seq |
Library source |
genomic |
Library selection |
ChIP |
Instrument model |
Illumina Genome Analyzer II |
|
|
Data processing |
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=mm9&g=wgEncodeLicrTfbs
|
|
|
Submission date |
Apr 19, 2012 |
Last update date |
May 15, 2019 |
Contact name |
ENCODE DCC |
E-mail(s) |
encode-help@lists.stanford.edu
|
Organization name |
ENCODE DCC
|
Street address |
300 Pasteur Dr
|
City |
Stanford |
State/province |
CA |
ZIP/Postal code |
94305-5120 |
Country |
USA |
|
|
Platform ID |
GPL9250 |
Series (2) |
GSE36027 |
Transcription Factor Binding Sites by ChIP-seq from ENCODE/LICR |
GSE49847 |
A comparative encyclopedia of DNA elements in the mouse genome |
|
Relations |
SRA |
SRX143832 |
BioSample |
SAMN00862246 |
Named Annotation |
GSM918740_mm9_wgEncodeLicrTfbsMefInputMAdult8wksC57bl6StdSig.bigWig |