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Sample GSM912921 Query DataSets for GSM912921
Status Public on Apr 11, 2012
Title Stanford_ChipSeq_MEL_p300_IgG-rab
Sample type SRA
 
Source name MEL
Organism Mus musculus
Characteristics lab: Stanford-m
lab description: Snyder - Stanford University
datatype: ChipSeq
datatype description: Chromatin IP Sequencing
cell: MEL
cell organism: mouse
cell description: Leukemia (K562 analog)
cell sex: M
antibody: p300
antibody antibodydescription: Rabbit Polyclonal. Antibody Target: P300
antibody targetdescription: EP300(c-20)
antibody vendorname: Santa Cruz Biotech
antibody vendorid: sc-585
treatment: None
treatment description: No special treatment or protocol applies
control: IgG-rab
control description: Input signal from Normal Rabbit IgG ChIP-seq.
age: immortalized
age description: Immortal cells
control: IgG-rab
control description: Input signal from Normal Rabbit IgG ChIP-seq.
controlid: MEL/None/Input/IgG-rab
replicate: 1
strain: Unknown
strain description: Unknown strain origin
Biomaterial provider Weissman lab
Treatment protocol None
Extracted molecule genomic DNA
Extraction protocol http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=mm9&g=wgEncodeSydhTfbs
 
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina Genome Analyzer II
 
Data processing http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=mm9&g=wgEncodeSydhTfbs
 
Submission date Apr 11, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL9250
Series (3)
GSE36030 Transcription Factor Binding Sites by ChIP-seq from ENCODE/Stanford/Yale
GSE49847 A comparative encyclopedia of DNA elements in the mouse genome
GSE51334 DNA replication-timing boundaries separate stable chromosome domains with cell-type-specific functions
Relations
Reanalyzed by GSE61349
SRA SRX140384
BioSample SAMN00854844
Named Annotation GSM912921_mm9_wgEncodeSydhTfbsMelP300IggrabSigV2.bigWig

Supplementary file Size Download File type/resource
GSM912921_mm9_wgEncodeSydhTfbsMelP300IggrabPkV2.narrowPeak.gz 551.3 Kb (ftp)(http) NARROWPEAK
GSM912921_mm9_wgEncodeSydhTfbsMelP300IggrabSigV2.bigWig 332.4 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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