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Sample GSM912920 Query DataSets for GSM912920
Status Public on Apr 11, 2012
Title Stanford_ChipSeq_CH12_p300_(SC-584)_IgG-rab
Sample type SRA
Source name CH12
Organism Mus musculus
Characteristics lab: Stanford-m
lab description: Snyder - Stanford University
datatype: ChipSeq
datatype description: Chromatin IP Sequencing
cell: CH12
cell organism: mouse
cell description: B-cell lymphoma (GM12878 analog)
cell sex: F
antibody: p300_(SC-584)
antibody antibodydescription: Rabbit polyclonal IgG, epitope mapping at the N-terminus of p300 of human origin. Antibody Target: P300
antibody targetdescription: Encodes the adenovirus E1A-associated cellular p300 transcriptional co-activator protein. Functions as histone acetyltransferase and regulates transcription via chromatin remodeling. Acetylates all four core histones in nucleosomes. Mediates cAMP-gene regulation by binding specifically to phosphorylated CREB protein
antibody vendorname: Santa Cruz Biotech
antibody vendorid: sc-584
treatment: None
treatment description: No special treatment or protocol applies
control: IgG-rab
control description: Input signal from Normal Rabbit IgG ChIP-seq.
age: immortalized
age description: Immortal cells
control: IgG-rab
control description: Input signal from Normal Rabbit IgG ChIP-seq.
controlid: CH12/None/Input/IgG-rab
replicate: 1
strain: B10.H-2aH-4bp/Wts
strain description: Derived by inbreeding from selected F2 progeny of B10.A X B10.129
Biomaterial provider Weissman lab
Treatment protocol None
Extracted molecule genomic DNA
Extraction protocol
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina Genome Analyzer II
Data processing
Submission date Apr 11, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL9250
Series (3)
GSE36030 Transcription Factor Binding Sites by ChIP-seq from ENCODE/Stanford/Yale
GSE49847 A comparative encyclopedia of DNA elements in the mouse genome
GSE51334 DNA replication-timing boundaries separate stable chromosome domains with cell-type-specific functions
SRA SRX140383
BioSample SAMN00854843
Named Annotation GSM912920_mm9_wgEncodeSydhTfbsCh12P300sc584IggrabSig.bigWig

Supplementary file Size Download File type/resource
GSM912920_mm9_wgEncodeSydhTfbsCh12P300sc584IggrabPk.narrowPeak.gz 750.1 Kb (ftp)(http) NARROWPEAK
GSM912920_mm9_wgEncodeSydhTfbsCh12P300sc584IggrabSig.bigWig 344.2 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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