|
| Status |
Public on Apr 11, 2012 |
| Title |
Stanford_ChipSeq_CH12_Input_IgG-rab (superseded by GSE136427) |
| Sample type |
SRA |
| |
|
| Source name |
CH12
|
| Organism |
Mus musculus |
| Characteristics |
lab: Stanford-m
lab description: Snyder - Stanford University
datatype: ChipSeq
datatype description: Chromatin IP Sequencing
cell: CH12
cell organism: mouse
cell description: B-cell lymphoma (GM12878 analog)
cell sex: F
antibody: Input
antibody description: Control signal which may be subtracted from experimental raw signal before peaks are called.
treatment: None
treatment description: No special treatment or protocol applies
control: IgG-rab
control description: Input signal from Normal Rabbit IgG ChIP-seq.
age: immortalized
age description: Immortal cells
control: IgG-rab
control description: Input signal from Normal Rabbit IgG ChIP-seq.
controlid: CH12/None/Input/IgG-rab
replicate: 1
strain: B10.H-2aH-4bp/Wts
strain description: Derived by inbreeding from selected F2 progeny of B10.A X B10.129
|
| Biomaterial provider |
Weissman lab
|
| Treatment protocol |
None
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=mm9&g=wgEncodeSydhTfbs
|
| |
|
| Library strategy |
ChIP-Seq |
| Library source |
genomic |
| Library selection |
ChIP |
| Instrument model |
Illumina Genome Analyzer II |
| |
|
| Description |
****************************
GSM912917 record metadata submitted on Apr 11 2012 may be obsolete, up to date experimental metadata was resubmitted by ENCODE DCC and is available at GSE136427
****************************
|
| Data processing |
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=mm9&g=wgEncodeSydhTfbs
|
| |
|
| Submission date |
Apr 11, 2012 |
| Last update date |
Nov 20, 2019 |
| Contact name |
ENCODE DCC |
| E-mail(s) |
encode-help@lists.stanford.edu
|
| Organization name |
ENCODE DCC
|
| Street address |
300 Pasteur Dr
|
| City |
Stanford |
| State/province |
CA |
| ZIP/Postal code |
94305-5120 |
| Country |
USA |
| |
|
| Platform ID |
GPL9250 |
| Series (2) |
| GSE36030 |
Transcription Factor Binding Sites by ChIP-seq from ENCODE/Stanford/Yale |
| GSE49847 |
A comparative encyclopedia of DNA elements in the mouse genome |
|
| Relations |
| Superseded by |
GSE136427 |
| SRA |
SRX140380 |
| BioSample |
SAMN00854840 |
| Named Annotation |
GSM912917_mm9_wgEncodeSydhTfbsCh12InputIggrabSig.bigWig |
