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Sample GSM880772 Query DataSets for GSM880772
Status Public on Feb 24, 2013
Title PT12 tamoxifen treated, replicate 2
Sample type RNA
 
Source name Tumor
Organism Homo sapiens
Characteristics xenograft: PT12
treatment: tamoxifen treated
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cDNA were prepared according to the standard Affymetrix protocol from 500ng total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
 
Hybridization protocol Following fragmentation, 3.5 ug of cDNA were hybridized for 20 hr at 48C on HuGene 1.1ST Array strip. GeneStrips were washed and stained in the Affymetrix Gene Atlas fluidics station.
Scan protocol GeneStrips were scanned using the Gene Atlas imaging station.
Description Human breast cancer was xenografted in NOD/SCID mice
Data processing The data were analyzed with Partek using RMA as normalization method.
 
Submission date Feb 24, 2012
Last update date Feb 24, 2013
Contact name peter kabos
E-mail(s) peter.kabos@ucdenver.edu
Organization name University of Colorado Denver
Department Medicine
Street address 12801 E. 17th Avenue
City Aurora
ZIP/Postal code 80045
Country USA
 
Platform ID GPL11532
Series (1)
GSE36075 Estrogen receptor dynamics in diverse patient-derived luminal breast cancer xenografts

Data table header descriptions
ID_REF
VALUE RMA values

Data table
ID_REF VALUE
7892501 3.00695
7892502 3.18307
7892503 2.73
7892504 6.49791
7892505 2.49885
7892506 3.37472
7892507 3.70981
7892508 3.45637
7892509 9.09704
7892510 3.8751
7892511 2.60632
7892512 6.60443
7892513 2.84238
7892514 10.862
7892515 7.19865
7892516 2.68774
7892517 4.80053
7892518 2.6093
7892519 4.92401
7892520 8.56341

Total number of rows: 33297

Table truncated, full table size 516 Kbytes.




Supplementary file Size Download File type/resource
GSM880772_89-9_RT.ga.cel.gz 4.0 Mb (ftp)(http) CEL
Processed data included within Sample table

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