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Sample GSM867 Query DataSets for GSM867
Status Public on Feb 12, 2002
Title PHO81c vs. wild type, exp.1
Sample type RNA
 
Channel 1
Source name Cy3-labeled cDNA from NBW7 mRNA in YPAD
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
Channel 2
Source name Cy5-labeled cDNA from NOF1(PHO81c) mRNA in YPAD
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
 
Description NBW7 (MATa ade2 his3 leu2 trp1 ura3 pho3-1), a wildtype strain for the PHO-regulation study. NBD82-1 (MATa ade2 his3 leu2 trp1 ura3 pho3-1 PHO81c-1). PHO81c-1 is a dominant mutation allele on the PHO81 locus. [Ref., Ogawa et al., (1995) Mol Cell Biol 15:997-1004] RNA samples were prepared from their logarithmic phase cultures (OD600 = 0.5). This data was converted from RANA database.
ScanAlyze version 2.41 scanning software was used.
Keywords = Phosphate
Keywords = Nutrient limitation
Lot batch = pho81
 
Submission date Feb 08, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL66
Series (1)
GSE20 Manipulation in phospate levels

Data table header descriptions
ID_REF reference identifier
CH1B_MEAN mean of channel 1 background pixels
CH1B_MEDIAN median of channel 1 background pixels
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean of channel 2 signal pixels
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background pixels
CH2B_MEDIAN median of channel 2 background pixels
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN arithmetic mean of ratios of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN arithmetic mean of ratios of CH2DN_MEAN to CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT UNF_VALUE
1 797 712 2022 2558 2134 503 424 505 2540 3045 .928 0 .329 1.008 75 81 .948 .796 1.055 1.256 1.049 1227 69 33 42 93 102 .329
2 901 784 1219 1502 1030 596 472 562 1226 1788 .866 0 .008 .808 55 62 1.183 .994 .845 1.006 .824 1050 69 33 42 103 112 .008
3 979 848 1875 2427 1899 663 528 629 2260 2889 .966 0 .269 1.044 60 66 .987 .83 1.013 1.205 .93 950 69 33 42 113 122 .269
4 1118 888 3109 3718 3158 731 560 667 3759 4426 .956 0 .274 .978 82 91 .984 .827 1.016 1.209 .984 950 69 33 42 123 132 .274
5 1088 880 2765 3544 2992 703 552 657 3562 4219 .98 0 .365 1.032 71 78 .924 .776 1.082 1.288 1.082 950 69 33 42 133 142 .365
6 1041 840 2687 3619 3099 654 520 619 3689 4308 .973 0 .457 1.121 55 76 .867 .728 1.153 1.373 1.152 950 69 33 42 143 152 .457
7 1029 832 526 1072 552 642 520 619 657 1276 .915 0 .321 .919 18 30 .953 .801 1.049 1.249 1.025 950 69 33 42 153 162 .321
8 880 824 2620 3460 2948 563 512 610 3509 4119 .985 0 .421 1.06 47 59 .889 .747 1.125 1.339 1.105 950 69 33 42 163 172 .421
9 853 800 2601 3328 2840 543 488 581 3381 3962 .979 0 .378 1.089 62 79 .916 .769 1.092 1.3 1.091 950 69 33 42 173 182 .378
10 834 776 245 678 214 528 464 552 255 807 .695 0 .058 .862 18 42 1.145 .961 .873 1.041 .512 950 69 33 42 183 192 .058
11 820 760 4 457 9 515 448 533 11 544 .291 0 1.459 .8 0 0 .444 .364 2.25 2.75 .208 950 69 33 42 193 202 1.459
12 803 752 449 9 499 440 524 11 535 .275 0 .667 0 1 .22 950 69 33 42 203 212
13 834 776 639 1067 611 519 456 543 727 1270 .948 0 .186 .895 20 21 1.046 .879 .956 1.138 .846 950 69 33 42 213 222 .186
14 867 816 147 665 185 541 480 571 221 792 .824 0 .588 .846 14 18 .795 .665 1.259 1.503 .886 950 69 33 42 223 232 .588
15 835 792 710 1149 677 513 472 562 806 1368 .921 0 .183 .917 44 53 1.049 .881 .954 1.135 .877 950 69 33 42 233 242 .183
16 800 752 502 966 534 485 432 514 636 1150 .924 0 .341 1 27 50 .94 .789 1.064 1.267 .922 950 69 33 42 243 252 .341
17 751 720 405 443 408 486 482 .376 0 1.143 0 0 .209 950 69 33 42 253 262
18 703 696 3 411 19 404 392 467 22 489 .55 0 2.874 1.143 0 4 .158 .136 6.333 7.333 .415 950 69 33 42 263 272 2.874
19 702 696 391 401 392 467 465 .19 0 .667 0 1 .124 950 69 33 42 273 282
20 705 696 27 408 16 402 392 467 19 486 .292 0 -.507 .714 0 1 1.688 1.421 .593 .704 .185 950 69 33 42 283 292 -.507

Total number of rows: 6528

Table truncated, full table size 763 Kbytes.




Supplementary data files not provided

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