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Sample GSM864354 Query DataSets for GSM864354
Status Public on Jan 24, 2012
Title UNC_FaireSeq_HepG2
Sample type SRA
 
Source name HepG2
Organism Homo sapiens
Characteristics datatype: FaireSeq
datatype description: FAIRE-seq Open Chromatin
cell description: hepatocellular carcinoma
controlid: HepG2/Input
labversion: baseAlignCounts.pl v 1,fseq v 1.84, iff_HepG2,p-value cutoff: 0.05,1% ENCODE array platform validation tests
replicate: 1,3,2
cell description: liver carcinoma
cell karyotype: cancer
cell lineage: endoderm
cell sex: M
controlid: HepG2/Input
labversion: align_on_cluster_bwa.pl v 1
replicate: 1
replicate description: tier 1
Biomaterial provider ATCC
Growth protocol HepG2_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeOpenChromFaire
 
Library strategy OTHER
Library source genomic
Library selection other
Instrument model Illumina Genome Analyzer
 
Data processing http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeOpenChromFaire
 
Submission date Jan 20, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL9052
Series (1)
GSE35239 Open Chromatin by FAIRE from ENCODE/OpenChrom(UNC Chapel Hill)
Relations
Reanalyzed by GSM1002654
SRA SRX117798
BioSample SAMN00779032
Named Annotation GSM864354_hg19_wgEncodeOpenChromFaireHepg2BaseOverlapSignal.bigWig
Named Annotation GSM864354_hg19_wgEncodeOpenChromFaireHepg2Sig.bigWig

Supplementary file Size Download File type/resource
GSM864354_hg19_wgEncodeOpenChromFaireHepg2BaseOverlapSignal.bigWig 1.9 Gb (ftp)(http) BIGWIG
GSM864354_hg19_wgEncodeOpenChromFaireHepg2Pk.narrowPeak.gz 1.4 Mb (ftp)(http) NARROWPEAK
GSM864354_hg19_wgEncodeOpenChromFaireHepg2Sig.bigWig 2.7 Gb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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