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GEO accession:
Sample GSM85915
Query DataSets for GSM85915
Status
Public on Dec 06, 2005
Title
B87R
Sample type
RNA
Source name
breast
Organism
Homo sapiens
Characteristics
Tumor, RNAlater preserved
Extracted molecule
total RNA
Extraction protocol
Total RNA from breast primary tumor samples according to Qiagen RNeasy Mini Kit protocol.
Label
biotin
Label protocol
Approximately 2 µg of total RNA was processed to produce biotinylated cRNA targets.
Hybridization protocol
standard Affymetrix procedures
Scan protocol
standard Affymetrix procedures
Description
Breast primary tumor
Data processing
Affymetrix Microarray Suite version 5.0
Submission date
Dec 02, 2005
Last update date
Dec 05, 2005
Contact name
Jack Yu
E-mail(s)
jyu9@prdus.jnj.com
Phone
858-320-3362
Fax
858-784-3182
Organization name
Veridex, LLC
Street address
3210 Merryfield Row
City
San Diego
State/province
CA
ZIP/Postal code
92121
Country
USA
Platform ID
GPL96
Series (1)
GSE3726
Prognostic gene signatures can be measured with samples stored in RNAlater
Data table header descriptions
ID_REF
VALUE
MAS5-calculated Signal intensity after global scaling the average intensity to 600.
Data table
ID_REF
VALUE
AFFX-BioB-5_at
18.5
AFFX-BioB-M_at
36.6
AFFX-BioB-3_at
13.3
AFFX-BioC-5_at
72
AFFX-BioC-3_at
49.8
AFFX-BioDn-5_at
89.7
AFFX-BioDn-3_at
270.7
AFFX-CreX-5_at
663.4
AFFX-CreX-3_at
1018.4
AFFX-DapX-5_at
0.4
AFFX-DapX-M_at
4.7
AFFX-DapX-3_at
0.7
AFFX-LysX-5_at
1.6
AFFX-LysX-M_at
0.9
AFFX-LysX-3_at
0.5
AFFX-PheX-5_at
0.3
AFFX-PheX-M_at
0.4
AFFX-PheX-3_at
4
AFFX-ThrX-5_at
0.2
AFFX-ThrX-M_at
3.2
Total number of rows:
22283
Table truncated, full table size
338 Kbytes
.
Supplementary data files not provided
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