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Sample GSM855 Query DataSets for GSM855
Status Public on Feb 12, 2002
Title heat shock 10 min
Sample type RNA
 
Channel 1
Source name time zero
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
Channel 2
Source name 10 min
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
 
Description ScanAlyze version 2.03 scanning software was used.
Keywords = starvation
Keywords = YPD-stationary-phase
Lot batch = y11n64
 
Submission date Feb 08, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL51
Series (1)
GSE18 Yeast Stress Response

Data table header descriptions
ID_REF reference identifier
CH1B_MEAN mean of channel 1 background pixels
CH1B_MEDIAN median of channel 1 background pixels
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean of channel 2 signal pixels
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background pixels
CH2B_MEDIAN median of channel 2 background pixels
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN arithmetic mean of ratios of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN arithmetic mean of ratios of CH2DN_MEAN to CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT UNF_VALUE
1 126 120 632 351 320 71 31 48 492 540 .608 0 -.361 .46 86 86 1.975 1.285 .506 .778 .469 1206 145 120 135 74 89 -.361
2 125 119 147 184 153 77 31 48 235 283 .593 0 .677 .804 37 60 .961 .626 1.041 1.599 .529 1004 145 120 135 91 106 .677
3 117 106 1329 908 882 70 26 40 1357 1397 .84 0 .03 .671 72 77 1.507 .979 .664 1.021 .569 1017 145 120 135 108 123 .03
4 113 99 146 144 119 82 25 38 184 222 .771 0 .334 .731 23 41 1.227 .793 .815 1.26 .596 1027 145 120 135 126 141 .334
5 128 106 1111 901 870 117 31 48 1338 1386 .836 0 .268 .757 65 73 1.277 .83 .783 1.204 .665 1039 145 120 135 143 158 .268
6 134 108 180 293 263 109 30 46 405 451 .635 0 1.17 1.61 21 46 .684 .444 1.461 2.25 .816 1067 145 120 135 161 176 1.17
7 117 106 84 53 90 31 48 81 129 .091 0 .977 6 29 .798 1058 145 120 135 178 193
8 113 105 12 49 17 122 32 49 26 75 .198 0 1.115 1.125 6 15 .706 .462 1.417 2.167 .277 1050 145 120 135 196 211 1.115
9 125 107 63 29 131 34 52 45 97 .164 0 1.08 4 26 .569 1005 145 121 136 213 228
10 124 108 2 65 32 100 33 51 49 100 .539 0 4.615 1.15 6 26 .063 .041 16 24.5 1.455 1020 145 121 136 230 245 4.615
11 124 109 7 92 57 111 35 54 88 142 .571 0 3.652 1.455 7 28 .123 .08 8.143 12.571 1.64 1026 145 121 136 248 263 3.652
12 122 109 7 84 48 107 36 55 74 129 .184 0 3.402 1.4 5 35 .146 .095 6.857 10.571 .619 1031 145 121 136 265 280 3.402
13 118 107 72 39 102 33 51 60 111 .355 0 1.094 6 30 2.877 1050 145 121 136 283 298
14 117 106 7 86 54 94 32 49 83 132 .199 0 3.568 1.5 8 27 .13 .084 7.714 11.857 1.296 1050 145 121 136 300 315 3.568
15 116 106 10 81 48 101 33 51 74 125 .272 0 2.888 .76 7 35 .208 .135 4.8 7.4 1.115 1032 145 121 136 318 333 2.888
16 120 108 25 235 200 106 35 54 308 362 .691 0 3.623 1 6 28 .125 .081 8 12.32 5.937 1019 145 121 136 335 350 3.623
17 121 107 18 142 108 84 34 52 166 218 .106 0 3.205 1.576 14 37 .167 .108 6 9.222 .655 1017 145 122 137 352 367 3.205
18 117 107 8 61 28 76 33 51 43 94 .543 0 2.426 1 8 31 .286 .186 3.5 5.375 1.033 1017 145 122 137 370 385 2.426
19 114 106 8 93 60 66 33 51 92 143 .424 0 3.524 .901 11 30 .133 .087 7.5 11.5 4.632 1026 145 122 137 387 402 3.524
20 117 108 1 77 44 79 33 51 67 118 .042 0 6.066 1.071 6 28 .023 .015 44 67 .259 1040 145 122 137 405 420 6.066

Total number of rows: 9216

Table truncated, full table size 1120 Kbytes.




Supplementary data files not provided
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