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Sample GSM854117 Query DataSets for GSM854117
Status Public on Jul 18, 2012
Title CD4+ CD69-_rep3
Sample type RNA
 
Source name Thymus
Organism Mus musculus
Characteristics hematopoiesis population: CD4+ CD69-
strain: C57BL/6
age: 2 months
gender: male
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
 
Hybridization protocol Following fragmentation, cRNA were hybridized for 16 hr at 45C on GeneChip Mouse 430 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
Scan protocol GeneChips were scanned using the GeneChip 3000 7G with GCOS version 1.4.0.036.
Description p45_s178.cel
Sample name: 45_178_CD4+ CD69-
Data processing The data were normalized using GC-RMA method on Gene Expression Commons system (http://gexc.stanford.edu/)
 
Submission date Dec 27, 2011
Last update date Mar 11, 2014
Contact name Jun Seita
E-mail(s) jseita@stanford.edu
Phone 650-725-5808
Organization name Stanford University
Department Institute for Stem Cell Biology and Regenerative Medicine
Lab Weissman
Street address Lokey Stem Cell Building #G3101, 265 Campus Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL1261
Series (1)
GSE34723 Gene Expression Commons: an open platform for absolute gene expression profiling

Data table header descriptions
ID_REF
VALUE log2 GC-RMA signal

Data table
ID_REF VALUE
1415670_at 7.71576
1415671_at 10.4282
1415672_at 10.6514
1415673_at 8.01858
1415674_a_at 8.86038
1415675_at 9.01718
1415676_a_at 10.7851
1415677_at 7.49747
1415678_at 10.5921
1415679_at 11.861
1415680_at 10.0536
1415681_at 10.48
1415682_at 6.78713
1415683_at 11.341
1415684_at 7.61619
1415685_at 7.36409
1415686_at 7.85812
1415687_a_at 10.027
1415688_at 10.5704
1415689_s_at 8.62674

Total number of rows: 45101

Table truncated, full table size 850 Kbytes.




Supplementary file Size Download File type/resource
GSM854117.cel.gz 3.2 Mb (ftp)(http) CEL
Processed data included within Sample table
Processed data are available on Series record

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