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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Sep 25, 2024 |
| Title |
RbpjKO-GFAP-Oct4_ATAC |
| Sample type |
SRA |
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| Source name |
Retina
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| Organism |
Mus musculus |
| Characteristics |
tissue: Retina
cell type: GFP+ cells
treatment: RbpjKO
library type: ATAC, 10xMultiome
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| Extracted molecule |
genomic DNA |
| Extraction protocol |
scRNA-Seq following 10x V3.1 guideline, scMultiome using 10xGenomics Multiome
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| Library strategy |
ATAC-seq |
| Library source |
genomic single cell |
| Library selection |
other |
| Instrument model |
Illumina NovaSeq 6000 |
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| Data processing |
scRNA-Seq: Sequencing results were processed through the Cell Ranger pipeline (10x Genomics) with default parameters.
Assembly: mm10, and custom mm10 with mCherry and Sun1GFP sequences
Supplementary files format and content: Control_mCherry_NMDA_atac_fragments.tsv.gz, Control_mCherry_NMDA_filtered_feature_bc_matrix.h5
Supplementary files format and content: Control_Oct4_NMDA_atac_fragments.tsv.gz, Control_Oct4_NMDA_filtered_feature_bc_matrix.h5
Supplementary files format and content: Rbpj_Oct4_NMDA_atac_fragments.tsv.gz, Rbpj_mCherry_NMDA_filtered_feature_bc_matrix.h5
Supplementary files format and content: Rbpj_mCherry_NMDA_atac_fragments.tsv.gz, Rbpj_Oct4_NMDA_filtered_feature_bc_matrix.h5
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| Submission date |
Sep 17, 2024 |
| Last update date |
Sep 27, 2024 |
| Contact name |
Sherine Awad |
| Organization name |
University of Michigan ann arbor
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| Street address |
1000 wall street
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| City |
Ann arbor |
| State/province |
Michigan |
| ZIP/Postal code |
48105 |
| Country |
USA |
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| Platform ID |
GPL24247 |
| Series (1) |
| GSE277390 |
Oct4 overexpression and suppression of Notch signaling synergistically induce neurogenic competence in mammalian Muller glia. |
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| Relations |
| BioSample |
SAMN43800522 |
| SRA |
SRX26107494 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSM8521520_Rbpj_Oct4_NMDA_atac_fragments.tsv.gz |
2.8 Gb |
(ftp)(http) |
TSV |
| GSM8521520_Rbpj_Oct4_NMDA_atac_fragments.tsv.gz.tbi.gz |
1.1 Mb |
(ftp)(http) |
TBI |
SRA Run Selector |
| Raw data are available in SRA |
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