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Sample GSM851 Query DataSets for GSM851
Status Public on Feb 12, 2002
Title YPD 13 d (25C)
Sample type RNA
 
Channel 1
Source name t=0
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
Channel 2
Source name 13 d
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
 
Description ScanAlyze version 2.33 scanning software was used.
Keywords = starvation
Keywords = YPD-stationary-phase
Lot batch = y12a81
 
Submission date Feb 08, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL52
Series (1)
GSE18 Yeast Stress Response

Data table header descriptions
ID_REF reference identifier
CH1B_MEAN mean of channel 1 background pixels
CH1B_MEDIAN median of channel 1 background pixels
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean of channel 2 signal pixels
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background pixels
CH2B_MEDIAN median of channel 2 background pixels
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN arithmetic mean of ratios of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN arithmetic mean of ratios of CH2DN_MEAN to CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT UNF_VALUE
1 133 100 1242 1723 1527 223 196 231 1796 2027 .64 0 .532 1.129 100 90 .813 .692 1.229 1.446 1.041 1142 177 83 98 108 123 .532
2 108 78 538 812 633 206 179 211 744 955 .893 0 .468 2.25 68 79 .85 .723 1.177 1.383 .758 896 177 83 98 126 141 .468
3 69 60 11 188 13 203 175 206 15 221 .037 0 .447 2.918 31 20 .846 .733 1.182 1.364 .094 905 177 83 98 143 158 .447
4 75 57 648 766 593 208 173 204 697 901 .812 0 .105 1.242 57 58 1.093 .93 .915 1.076 .652 941 177 83 98 161 176 .105
5 71 52 2093 3062 2888 203 174 205 3397 3602 .901 0 .699 1.382 92 93 .725 .616 1.38 1.623 1.118 928 177 83 98 179 194 .699
6 60 50 577 739 569 192 170 200 669 869 .81 0 .213 1.253 54 55 1.014 .862 .986 1.159 .716 928 177 83 98 196 211 .213
7 62 51 7 188 23 193 165 194 27 221 .048 -100 3.188 28 25 .304 .259 3.286 3.857 .135 928 177 83 98 214 229 1.948
8 61 51 9 177 9 192 168 198 10 208 .23 0 .152 4.107 26 24 1 .9 1 1.111 .614 928 177 83 98 231 246 .152
9 62 52 7 173 6 184 167 196 8 204 .046 -100 2.34 27 22 1.167 .875 .857 1.143 .115 928 177 83 98 249 264 .193
10 98 52 193 25 192 168 198 29 227 .038 -100 3.316 20 26 .107 928 177 83 98 266 281
11 96 51 7 191 23 197 168 198 27 225 .021 -100 3.643 25 25 .304 .259 3.286 3.857 .07 950 177 83 98 284 299 1.948
12 68 51 7 191 28 200 163 192 33 225 .015 -100 2.353 26 27 .25 .212 4 4.714 .045 928 177 83 98 302 317 2.237
13 78 50 7 190 34 190 156 184 40 224 .063 -100 3.194 27 30 .206 .175 4.857 5.714 .173 928 177 83 98 319 334 2.515
14 72 50 11 179 17 184 162 191 20 211 -.073 0 .862 3.643 27 29 .647 .55 1.545 1.818 -.177 928 177 83 98 337 352 .862
15 66 51 6 192 24 191 168 198 28 226 -.123 0 2.222 3.625 24 29 .25 .214 4 4.667 -.425 928 177 83 98 354 369 2.222
16 67 52 1 188 17 190 171 201 20 221 .006 -100 5.423 20 25 .059 .05 17 20 .022 919 177 84 99 372 387 4.322
17 60 54 182 18 179 164 193 21 214 .002 -100 2.893 19 24 .006 896 177 84 99 390 405
18 62 53 7 178 25 176 153 180 29 209 -.009 -100 3.281 29 29 .28 .241 3.571 4.143 -.023 896 177 84 99 407 422 2.051
19 63 54 6 170 21 176 149 175 25 200 -.067 0 2.059 2.812 25 27 .286 .24 3.5 4.167 -.183 896 177 84 99 425 440 2.059
20 63 54 171 22 176 149 175 26 201 -.018 -100 4.116 17 32 -.058 896 177 84 99 442 457

Total number of rows: 9216

Table truncated, full table size 1104 Kbytes.




Supplementary data files not provided
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