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Sample GSM850 Query DataSets for GSM850
Status Public on Feb 12, 2002
Title YPD 7 d (25C)
Sample type RNA
 
Channel 1
Source name t=0
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
Channel 2
Source name 7 d
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
 
Description ScanAlyze version 2.33 scanning software was used.
Keywords = starvation
Keywords = YPD-stationary-phase
Lot batch = y12a80
 
Submission date Feb 08, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL52
Series (1)
GSE18 Yeast Stress Response

Data table header descriptions
ID_REF reference identifier
CH1B_MEAN mean of channel 1 background pixels
CH1B_MEDIAN median of channel 1 background pixels
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean of channel 2 signal pixels
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background pixels
CH2B_MEDIAN median of channel 2 background pixels
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN arithmetic mean of ratios of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN arithmetic mean of ratios of CH2DN_MEAN to CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT UNF_VALUE
1 88 73 903 940 851 103 89 141 1351 1492 .687 0 .581 .957 97 92 1.061 .668 .942 1.496 .783 1142 177 84 99 112 127 .581
2 102 62 819 637 548 106 89 141 870 1011 .922 0 .087 .922 72 80 1.495 .941 .669 1.062 .519 919 177 84 99 129 144 .087
3 77 43 5 105 14 106 91 144 23 167 .215 -100 1.667 28 22 .357 .217 2.8 4.6 .482 928 177 84 99 147 162 2.202
4 51 41 476 472 382 101 90 143 606 749 .928 0 .348 .998 68 58 1.246 .785 .803 1.273 .687 896 177 84 99 165 180 .348
5 51 40 1852 1814 1727 103 87 138 2741 2879 .868 0 .566 1.015 94 93 1.072 .676 .933 1.48 .657 896 177 84 99 182 197 .566
6 53 41 587 575 487 105 88 140 773 913 .854 0 .397 1.201 59 53 1.205 .759 .83 1.317 .604 896 177 84 99 200 215 .397
7 53 43 13 95 7 110 88 140 11 151 .008 -100 2.182 31 26 1.857 1.182 .538 .846 .01 896 177 84 99 217 232 -.241
8 57 44 11 96 4 116 92 146 6 152 -.023 -100 2.227 28 24 2.75 1.833 .364 .545 -.03 919 177 84 99 235 250 -.874
9 59 43 6 103 13 104 90 143 20 163 .013 -100 1.971 28 27 .462 .3 2.167 3.333 .023 928 177 83 98 253 268 1.737
10 67 42 3 98 11 113 87 138 18 156 -.059 -100 1.756 19 28 .273 .167 3.667 6 -.095 928 177 83 98 270 285 2.585
11 68 42 9 111 27 111 84 133 43 176 .069 -100 2.288 31 36 .333 .209 3 4.778 .129 928 177 83 98 288 303 2.256
12 77 46 4 102 14 106 88 140 22 162 .025 0 2.459 1.684 24 33 .286 .182 3.5 5.5 .045 928 177 83 98 305 320 2.459
13 73 47 3 98 13 106 85 135 21 156 .13 -100 2.011 24 30 .231 .143 4.333 7 .287 950 177 83 98 323 338 2.807
14 64 46 6 103 19 97 84 133 30 163 .062 0 2.322 1.667 29 29 .316 .2 3.167 5 .134 928 177 83 98 341 356 2.322
15 63 50 97 7 104 90 143 11 154 -.011 -100 1.931 22 23 -.023 919 177 83 98 358 373
16 60 50 1 100 1 111 99 157 2 159 .007 -100 2.549 22 27 1 .5 1 2 .015 905 177 83 98 376 391 1
17 62 52 13 98 109 99 157 156 .075 -100 1.333 29 19 .105 896 177 83 98 393 408
18 61 54 8 109 12 107 97 154 19 173 .04 0 1.248 1.742 27 25 .667 .421 1.5 2.375 .042 919 177 83 98 411 426 1.248
19 62 53 10 105 4 110 101 160 7 167 .075 -100 2.278 25 20 2.5 1.429 .4 .7 .106 896 177 83 98 429 444 -.515
20 79 54 6 104 158 104 165 165 .124 -100 1.926 22 22 .183 896 177 83 98 446 461

Total number of rows: 9216

Table truncated, full table size 1090 Kbytes.




Supplementary data files not provided
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