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Sample GSM849304 Query DataSets for GSM849304
Status Public on Dec 14, 2011
Title UW_ChipSeq_GM12871_CTCF
Sample type SRA
Source name GM12871
Organism Homo sapiens
Characteristics lab: UW
lab description: Stamatoyannopoulous - University of Washington
datatype: ChipSeq
datatype description: ChIP-seq
cell: GM12871
cell organism: human
cell description: B-lymphocyte, lymphoblastoid, International HapMap Project, CEPH/Utah pedigree 1459, treatment: Epstein-Barr Virus transformed.
cell lineage: mesoderm
cell sex: M
antibody: CTCF
antibody antibodydescription: rabbit polyclonal. Antibody Target: CTCF
antibody targetdescription: CTCF zinc finger transcription factor. A sequence specific DNA binding protein that functions as an insulator, blocking enhancer activity. It has also been suggested to block the spreading of chromatin structure in certain instances.
antibody vendorname: Millipore
antibody vendorid: 07-729
treatment: None
treatment description: No special treatment or protocol applies
control: std
control description: Standard input signal for most experiments.
controlid: GM12871/None/Input/std
labexpid: DS10999
labversion: Bowtie 0.12.7
replicate: 1
replicate description: tier 1
Biomaterial provider Coriell
Treatment protocol None
Growth protocol GM12871_Stam_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina Genome Analyzer II
Data processing
Submission date Dec 14, 2011
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL9115
Series (1)
GSE30263 CTCF Binding Sites by ChIP-seq from ENCODE/University of Washington
SRA SRX111777
BioSample SAMN00765605
Named Annotation GSM849304_hg19_wgEncodeUwTfbsGm12871CtcfStdRawRep1.bigWig
Named Annotation GSM849304_hg19_wgEncodeUwTfbsGm12871CtcfStdRawRep2.bigWig

Supplementary file Size Download File type/resource
GSM849304_hg19_wgEncodeUwTfbsGm12871CtcfStdHotspotsRep1.broadPeak.gz 2.1 Mb (ftp)(http) BROADPEAK
GSM849304_hg19_wgEncodeUwTfbsGm12871CtcfStdHotspotsRep2.broadPeak.gz 2.7 Mb (ftp)(http) BROADPEAK
GSM849304_hg19_wgEncodeUwTfbsGm12871CtcfStdPkRep1.narrowPeak.gz 662.9 Kb (ftp)(http) NARROWPEAK
GSM849304_hg19_wgEncodeUwTfbsGm12871CtcfStdPkRep2.narrowPeak.gz 826.9 Kb (ftp)(http) NARROWPEAK
GSM849304_hg19_wgEncodeUwTfbsGm12871CtcfStdRawRep1.bigWig 93.9 Mb (ftp)(http) BIGWIG
GSM849304_hg19_wgEncodeUwTfbsGm12871CtcfStdRawRep2.bigWig 78.6 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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